Clone Read LE_HBa0044D09_SP6_142613

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0044D09_SP6_142613
Primer
SP6
ID from Seq. Facility
LE_HBa_044_D09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
665 trimmed for vector and quality, 851 raw
Genbank Accession
DU042986
Sequence
>LE_HBa0044D09_SP6_142613 (raw untrimmed)
TTAACCACTGTTTGAATAATCTTACTNCTTATTTAGTCCCTAATCAGTTTATGAAGCTGTTGAAAAAGTTCGTCATATTAGAGAGAGGTTGAGAAAGGCT
CAAAGTAGGCAAAATTCATATGCTGATGTGAGAAGAAGGGATGTAGAATTTTAAATTGGTGATTAGGTTTATTTGAAAATATCATTCATGAAGGGTTGAT
GAGGTTTGGGAAGAAAGATAAATTCAGTCCCCGGTTTGTAGGTCCTTGTCAAATTTTCAAGTGTATTTGGAAAGTTGCCTAGCTATGAGTTGGACTTGCC
AAATGAGTTGGCCCCGGTTCACCCGATATTTCATGTTTCGATGCTTAAAAAGTATATTGGGGACTTGGTTTCCTTTATTCCCCTAGTAGGTTGGGAGTTG
ATGAAAACCTTTCCTACGAAAGGTTTCGGTAAAGATCTTTTACCAACAATTCAAAAGGTTGAGAAACAAGGAAGTAGCTTCTGTTAAGGTTCGATGGGAT
AAATCATTTAGTTAAGTGAGCTACTTGGGGGGCCGAGGCTGATATGAAGTCCTGATATTCTCATCTCTTTTCTTCTACTCCTAATCAAGCTTGAGGTAAG
TAGTTTCTATGGATTTTTAGTATCTTGGGAGTCATGTGTATTCTATGAGTTTTTCCATGATTTCCCTATATTATGAATGTTCTTGATGAAATTCATGTTT
AGTAAGAAAATGAGTTTTCATGATTAATGTTCCTCCTGTTGTGCATTTAGCATGAGTTGCCTATTTGACTTTCTAAGATGTATTGAGGAACATACTTTAC
TATTATTTTTGAGAGTATTGGCATTTTGGATTCATGATTTTATGTTTAGCC
>LE_HBa0044D09_SP6_142613 (trimmed for quality and cloning vector)
TTTATGAAGCTGTTGAAAAAGTTCGTCATATTAGAGAGAGGTTGAGAAAGGCTCAAAGTAGGCAAAATTCATATGCTGATGTGAGAAGAAGGGATGTAGA
ATTTTAAATTGGTGATTAGGTTTATTTGAAAATATCATTCATGAAGGGTTGATGAGGTTTGGGAAGAAAGATAAATTCAGTCCCCGGTTTGTAGGTCCTT
GTCAAATTTTCAAGTGTATTTGGAAAGTTGCCTAGCTATGAGTTGGACTTGCCAAATGAGTTGGCCCCGGTTCACCCGATATTTCATGTTTCGATGCTTA
AAAAGTATATTGGGGACTTGGTTTCCTTTATTCCCCTAGTAGGTTGGGAGTTGATGAAAACCTTTCCTACGAAAGGTTTCGGTAAAGATCTTTTACCAAC
AATTCAAAAGGTTGAGAAACAAGGAAGTAGCTTCTGTTAAGGTTCGATGGGATAAATCATTTAGTTAAGTGAGCTACTTGGGGGGCCGAGGCTGATATGA
AGTCCTGATATTCTCATCTCTTTTCTTCTACTCCTAATCAAGCTTGAGGTAAGTAGTTTCTATGGATTTTTAGTATCTTGGGAGTCATGTGTATTCTATG
AGTTTTTCCATGATTTCCCTATATTATGAATGTTCTTGATGAAATTCATGTTTAGTAAGAAAATG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.946273
Expected error %
0.2383
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38734.1| Score 105 E Value 8e-28 Identity 52.90% Align. Length 411bp (61.80%) Frame 1
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38792.1| Score 102 E Value 1e-24 Identity 51.40% Align. Length 459bp (69.02%) Frame 1
putative gag-pol polyprotein [Solanum demissum] gb|AAT38791.1| putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0044D09
Clone
Clone name
hba-44d9
LE_HBa0044D09
C10HBa0044D09
P044D09
Clone type
BAC
Contamination
none
Estimated length
61,446
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found