Clone Read LE_HBa0044D09_T7_142614

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0044D09_T7_142614
Primer
T7
ID from Seq. Facility
LE_HBa_044_D09-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
775 trimmed for vector and quality, 895 raw
Genbank Accession
DU042987
Sequence
>LE_HBa0044D09_T7_142614 (raw untrimmed)
CTGGGTCCCGCGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTCAATTAACCCATAATGACATATAAATATTGTTTTTTTTCTAAACGAAAAGG
ACATTAATAAACCAAATTTTAACATATGCCATAAATAAAAAAAATTCAATGTTTTTGTGGTATATTTAGTTTCGTTTCCCAAATTTTAATTGATTTAATA
AAGGAAAAATTGTATATAATAGCAAACTAATAACCTAAAATAAATGGAATAGCTAGGGTTTGATTTAATTGTGCTCCATAACAAACGTTAACTAAAATTT
GCCAGCGTCTCTCTCCCAGAAATCTCGCTCGCCACTCTCTATTCTCGCTTGCCTCTCTCACTTTATACACATAAGTGTATAATTCTGTTTCTGTTTTGTA
TAAAGCGAGAGAAAATTGTATATACACATGAAAAAATATATCTTCGTGTTATACACTTATTTATACAATTTACAAACATTTTACTTCAAATATTGCAGAG
AAAAAGGTCAACGAATAATACAATTGCGAATTATTCTTCAATAGTTCATCTATATGCATTTTGAATTCTTCTAAATTATCAAAATTATATTTTAATGGTT
TTTGTGTTATTATACTATTTTCATCTATTAATTCAATTTTTACTTTCATCTTATGTTTTTCCCATCCTTGTAATGAATTTTCACTATATAATAATTCTTG
TTGTTCGTTAATTATTCTAACTCTATCTATTGTAAGTATGATAATTTCTAATTGTGTTATTTGATTTTTACTTATATTTTCCATTCCCTGGTTTTTTTTT
TCACTTCCTTTTATCCATTTCTGTGGGTTTACGTTGTCTCTTCTTGTCCTTTGTTTAATAAAATTTTAAAAACCTTCTTTGGTTCTATTAATCCC
>LE_HBa0044D09_T7_142614 (trimmed for quality and cloning vector)
AGCTTTCAATTAACCCATAATGACATATAAATATTGTTTTTTTTCTAAACGAAAAGGACATTAATAAACCAAATTTTAACATATGCCATAAATAAAAAAA
ATTCAATGTTTTTGTGGTATATTTAGTTTCGTTTCCCAAATTTTAATTGATTTAATAAAGGAAAAATTGTATATAATAGCAAACTAATAACCTAAAATAA
ATGGAATAGCTAGGGTTTGATTTAATTGTGCTCCATAACAAACGTTAACTAAAATTTGCCAGCGTCTCTCTCCCAGAAATCTCGCTCGCCACTCTCTATT
CTCGCTTGCCTCTCTCACTTTATACACATAAGTGTATAATTCTGTTTCTGTTTTGTATAAAGCGAGAGAAAATTGTATATACACATGAAAAAATATATCT
TCGTGTTATACACTTATTTATACAATTTACAAACATTTTACTTCAAATATTGCAGAGAAAAAGGTCAACGAATAATACAATTGCGAATTATTCTTCAATA
GTTCATCTATATGCATTTTGAATTCTTCTAAATTATCAAAATTATATTTTAATGGTTTTTGTGTTATTATACTATTTTCATCTATTAATTCAATTTTTAC
TTTCATCTTATGTTTTTCCCATCCTTGTAATGAATTTTCACTATATAATAATTCTTGTTGTTCGTTAATTATTCTAACTCTATCTATTGTAAGTATGATA
ATTTCTAATTGTGTTATTTGATTTTTACTTATATTTTCCATTCCCTGGTTTTTTTTTTCACTTCCTTTTATCCAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.895637
Expected error %
0.3965
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF08289.1| Score 110 E Value 3e-23 Identity 19.30% Align. Length 284bp (36.65%) Frame 2
polyprotein [tobacco vein-clearing virus] ref|NP_569141.1| polyprotein [tobacco vein-clearing virus]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAC88794.1| Score 109 E Value 7e-23 Identity 19.30% Align. Length 284bp (36.65%) Frame 2
putative polyprotein [Nicotiana tabacum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0044D09
Clone
Clone name
hba-44d9
LE_HBa0044D09
C10HBa0044D09
P044D09
Clone type
BAC
Contamination
none
Estimated length
61,446
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found