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Clone Read LE_HBa0170J22_SP6_14682

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0170J22_SP6_14682
Primer
SP6
ID from Seq. Facility
LE_HBa_170_J22-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
659 trimmed for vector and quality, 802 raw
Genbank Accession
DU032992
Sequence
>LE_HBa0170J22_SP6_14682 (raw untrimmed)
AATTGTAACCCGGACTTGGGTCAGACTTCCCATCTTCCTTCAGCAGCTGCACTACGGTGCCGCCTGCAGACCGTCACAAGCACGACGGACCGTCACAAGC
TCCGTAGATGGTCTCTTCTGCATTTCTTCGCTCAAAATATCCGCATTCATCTTTGGACAGATTTCCTGCAAAATAAAGAGAAACTTATACAAACATTAGC
ACAAAAAGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATAAATAATATCGTGAAACCACGGTATATTATAAGTCTCAAAGAAACTTATTAAGTTTCA
AAGTTATTCGTCAAAATGGCTATCATTTGAGACGGATAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGTGCAT
GAAAAATTACCTGCACTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCAAATGCCTCCGTAAATTAAAGGCTCACTAATTTTAATGATT
TTATCATTTGGCATGATCGGTGGGGCCATTCTGGATTTAATATGATGCGCAAAATCATTGAAAATTCATATGGGCACACCTTAAAGAGCCCAAATATCCT
TCAATCAAAGGAATTCTCTTGTGGTGCTTGTTCTCAAGGAAAGTTGATCATTAAACCATCAACAATTGAGGTTGAAATTGAATCCCCTGCGTTTCTGGAA
CGTATACAGGGTGATATATATGGACCAATTCAACTTGTATGTGGACCCCTTTAAAAATTATATGGCCTTGAATAGATGTTTCTACAAGATGGTTCCCTGG
TG
>LE_HBa0170J22_SP6_14682 (trimmed for quality and cloning vector)
ACTTCCCATCTTCCTTCAGCAGCTGCACTACGGTGCCGCCTGCAGACCGTCACAAGCACGACGGACCGTCACAAGCTCCGTAGATGGTCTCTTCTGCATT
TCTTCGCTCAAAATATCCGCATTCATCTTTGGACAGATTTCCTGCAAAATAAAGAGAAACTTATACAAACATTAGCACAAAAAGGCTTTTGGACACACTA
AACTTAAGGAAAAAGTATAAATAATATCGTGAAACCACGGTATATTATAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGTCAAAATGGCTATC
ATTTGAGACGGATAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGTGCATGAAAAATTACCTGCACTTTCTTCT
GGGTTGTACTATACAAGTATAAGTACAGTTGAATCAAATGCCTCCGTAAATTAAAGGCTCACTAATTTTAATGATTTTATCATTTGGCATGATCGGTGGG
GCCATTCTGGATTTAATATGATGCGCAAAATCATTGAAAATTCATATGGGCACACCTTAAAGAGCCCAAATATCCTTCAATCAAAGGAATTCTCTTGTGG
TGCTTGTTCTCAAGGAAAGTTGATCATTAAACCATCAACAATTGAGGTTGAAATTGAAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.965455
Expected error %
0.445389
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF67380.1| Score 114 E Value 3e-24 Identity 14.70% Align. Length 401bp (60.85%) Frame 3
Hypothetical protein T15F17.l [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAA97087.1| Score 112 E Value 8e-24 Identity 14.20% Align. Length 401bp (60.85%) Frame 3
copia-type pol polyprotein-like [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0170J22
Clone
Clone name
hba-170j22
LE_HBa0170J22
P170J22
Clone type
BAC
Contamination
none
Estimated length
120,456
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found