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Clone Read LE_HBa0170J22_T7_14683

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0170J22_T7_14683
Primer
T7
ID from Seq. Facility
LE_HBa_170_J22-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
438 trimmed for vector and quality, 791 raw
Genbank Accession
DU032993
Sequence
>LE_HBa0170J22_T7_14683 (raw untrimmed)
AATGTGGTCCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTACAACCNGGATGTTGATTGCACCCGAGGACCACGAAAAGACCACATTAACT
TGTCCTTGTGGCACATATGTTTTCACACGCATGCCCTTTGGGCTTTGTAATGCACCAGCGACTTTTCAAAGGTGTATTATGACCATATTTCATGACATGG
TAGAAGATTTTGTGGATGTTTTTGTGGACTATTTCCAAGACTTGGAAGCTCGTAAAGGGAACTCCGGAAGAGGTGCGACACCTGGAATCGTGATAAGGCA
GTTGTTAGATGTGAAGACACAAACTTAGTGTTAAATGGGAGAAGTGTCATTTCTTGGTTAAACAGGGGATAGTGTTGGTACACAAGGTTTATAAATCTTA
TCTAGAAGTGGATAAGGCCAATGTGGAAGCCCTTTAAAATTCCCCCCCCCTATCTCTGTGAATGGGGTTTGTAGTTTCATGGTCATTCAGGTTCTTCTCC
GAGTTTTCACAATGATTTCATAATCGACATCTAGGTTTATTTGGAAAAGGAGGGAATTTGATTTGATCATCTTCTTTATACTTTCCTTTTACTAATAGAT
TTTTTCTGCTTCCTAAACTAATCTTAATAGATGCAGGTTATCATAATTTATCCGGCATTTTATTTATCATTCTACTCTCCTGGTTAGTATCCCAGACATG
TACAACTTTATTCCTTCTTATGTGCACAGAATATGTGATTATGCTTTCTCCTTTCTTTCTACATTCGCTAGTAAATATCTCTGGTTTTCTA
>LE_HBa0170J22_T7_14683 (trimmed for quality and cloning vector)
AGCTTACAACCNGGATGTTGATTGCACCCGAGGACCACGAAAAGACCACATTAACTTGTCCTTGTGGCACATATGTTTTCACACGCATGCCCTTTGGGCT
TTGTAATGCACCAGCGACTTTTCAAAGGTGTATTATGACCATATTTCATGACATGGTAGAAGATTTTGTGGATGTTTTTGTGGACTATTTCCAAGACTTG
GAAGCTCGTAAAGGGAACTCCGGAAGAGGTGCGACACCTGGAATCGTGATAAGGCAGTTGTTAGATGTGAAGACACAAACTTAGTGTTAAATGGGAGAAG
TGTCATTTCTTGGTTAAACAGGGGATAGTGTTGGTACACAAGGTTTATAAATCTTATCTAGAAGTGGATAAGGCCAATGTGGAAGCCCTTTAAAATTCCC
CCCCCCTATCTCTGTGAATGGGGTTTGTAGTTTCATGG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.976379
Expected error %
2.79555
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAL06419.1| Score 76 E Value 4e-24 Identity 48.90% Align. Length 393bp (89.73%) Frame 1
reverse transcriptase [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAL06420.1| Score 76 E Value 3e-23 Identity 75.60% Align. Length 369bp (84.25%) Frame 1
reverse transcriptase [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0170J22
Clone
Clone name
hba-170j22
LE_HBa0170J22
P170J22
Clone type
BAC
Contamination
none
Estimated length
120,456
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found