Clone Read LE_HBa0077H09_SP6_18400

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0077H09_SP6_18400
Primer
SP6
ID from Seq. Facility
LE_HBa_077_H09-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 921 raw
Sequence
>LE_HBa0077H09_SP6_18400 (raw untrimmed)
AGCATTCGATGGTAGAGAGGTCCCCCTTATCAAAAGAGGATGAGGCAGCGAACGACACCGCACTAAGTGTATACTTGAAACGTGACTCGCATTACAGGCC
GGCCGGGCGAATACAGGACATATCTTAAATTATATCCACATACCTTATCCAATCGAAAACTGGGACGANGTCTGAGAAAGGCCGGAGCCAACTAATTAAC
GGAGTGTTCNAACTCATGTCTAGGAGAGGAAACTCGTCTGTAGTAGGTCAGTTCGCGCCTGCCGACTCTGACGCCCCNCACGCCGCGCCGCGAAAGAGAA
AACACATCAGTCGCCTCTAGACACAGTCGCAC
AGAGGGGAAAAGGCACAACAGTAGAGAGTAGAAAAGAAGGCACCGCGGCTACCAATGTACATAGACGA
CGCCTCGCAAAACACAGGAGTGCAAGCGCGATGAATATTTACAAATAAGAGAGTAACCTCGACGACACCCACCAGGGAATATTAGGAGGACGCTATAGTT
GATATAAGAGATGCTGCGCGAGCATGTGAAACGAAGAGCGGTCANATAGAGTGAGCAACTTGCCAGACCCTCAGCTGACGTAATAGTATACGCCCTCAGT
AATTAGCACGACAAGCCTGCACAGATCCTCCTCCTCCCATACCACGCTCACGAATGACTTGACTCGTGATGGGAGGGGAAGCGAGACGAGGACCTAACGA
CGATACGCAAGGACAAGACACACAGAATCTAAGAAATGATGAGAAAGAAAACGAGGTACNCTATATGCAAACCGTAGAACAAGAACAGGAATTAGACCGC
GCGTTAGCGTAGGAGAAGACAACAGACACACGATAANAAACCGACACAAAGGATCTGAACGCGAGATTGAATGCACTATCACTTGACATGTGATAAAGAG
AGAGACCTCCGCCACAGCTCC
>LE_HBa0077H09_SP6_18400 (trimmed for quality and cloning vector)
AG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.828516
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0077H09
Clone
Clone name
hba-77h9
LE_HBa0077H09
C03HBa0077H09
P077H09
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found