Clone Read LE_HBa0079H04_SP6_19926

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0079H04_SP6_19926
Primer
SP6
ID from Seq. Facility
LE_HBa_079_H04-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
788 trimmed for vector and quality, 880 raw
Genbank Accession
DU037158
Sequence
>LE_HBa0079H04_SP6_19926 (raw untrimmed)
TATAAGGTTTAGTGTATAGTGAGACATACCTATGGGGAGTCTTATCCACTGGTCTGGTAGGCCCATTGAGAATCATCAAGCCTCCTTGACCAATCCGTTC
TACTATCGTTCACTATTTTTGATAATATCTGTTTGATCTCCCGATTCGACACTTCAACTTACCCAGTAGTTTGAGGGTGGTAAGGAGTTGCCATATTATG
GCGAACCCTATATTTCTCCAATAACCCCTTGAACAATCTGTTGTAGAAGTGGGATCCCCCATCACTAATTATTGCCCTTGGGGTGCCAAAACGAGAGAAT
ATATTTTTTCTAAGAATGCAGTGACACTCTTCCCTTCATTGTTTGCAAGGGCAATGGCTTCGACCCATTTAGTTACATAATCAATTGCTACTAGAATCTA
CTTCATTCCATGAGAACTCACAAAAGGTCCCATAAAGTCAATACCCCAAACATCAAATAACTCAATCACAAGAATGGGGTTTAGAGGGAGCTCTTTCTTT
CTTGAAATGATGCCATCTCGTTGGCATCTGTCAAATGCTTTAGAAAACTCATGACCATCTTGATGAAAAGTTGGCCAATAGTAACCACATTGTAATATCT
TATGAGCGGTTCGGATACCTCTGTGATGTCAACCAACGGGTGAGGAATGGCATGCCTCTAACACACTCAACATTACACATTCTTGCACACAACGCCTAAT
AAGCCCGTCGGAACAACTATTATATAAGTATGGTTCATCCCAAAAGAACTTCTTCACATCGTACATGAACTTTTTTCTTTGATGAAAGGACAAGTCCGAT
GGAACAATATTACTAGCCCAAATAGTTCGCAAAATCTGCGAACCATGGAATGAAGTCTTGTGAAGCAGCCAATACATGCT
>LE_HBa0079H04_SP6_19926 (trimmed for quality and cloning vector)
CATACCTATGGGGAGTCTTATCCACTGGTCTGGTAGGCCCATTGAGAATCATCAAGCCTCCTTGACCAATCCGTTCTACTATCGTTCACTATTTTTGATA
ATATCTGTTTGATCTCCCGATTCGACACTTCAACTTACCCAGTAGTTTGAGGGTGGTAAGGAGTTGCCATATTATGGCGAACCCTATATTTCTCCAATAA
CCCCTTGAACAATCTGTTGTAGAAGTGGGATCCCCCATCACTAATTATTGCCCTTGGGGTGCCAAAACGAGAGAATATATTTTTTCTAAGAATGCAGTGA
CACTCTTCCCTTCATTGTTTGCAAGGGCAATGGCTTCGACCCATTTAGTTACATAATCAATTGCTACTAGAATCTACTTCATTCCATGAGAACTCACAAA
AGGTCCCATAAAGTCAATACCCCAAACATCAAATAACTCAATCACAAGAATGGGGTTTAGAGGGAGCTCTTTCTTTCTTGAAATGATGCCATCTCGTTGG
CATCTGTCAAATGCTTTAGAAAACTCATGACCATCTTGATGAAAAGTTGGCCAATAGTAACCACATTGTAATATCTTATGAGCGGTTCGGATACCTCTGT
GATGTCAACCAACGGGTGAGGAATGGCATGCCTCTAACACACTCAACATTACACATTCTTGCACACAACGCCTAATAAGCCCGTCGGAACAACTATTATA
TAAGTATGGTTCATCCCAAAAGAACTTCTTCACATCGTACATGAACTTTTTTCTTTGATGAAAGGACAAGTCCGATGGAACAATATTA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.978402
Expected error %
0.342148
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF63114.1| Score 192 E Value 5e-54 Identity 52.50% Align. Length 580bp (73.60%) Frame 1
Hypothetical protein [Arabidopsis thaliana] pir||B96502 hypothetical protein F28H19.8 [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF24529.1| Score 190 E Value 9e-76 Identity 50.30% Align. Length 760bp (96.45%) Frame 1
F7F22.15 [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0079H04
Clone
Clone name
hba-79h4
LE_HBa0079H04
C01HBa0079H04
P079H04
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found