Clone Read LE_HBa0079H04_T7_19927

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0079H04_T7_19927
Primer
T7
ID from Seq. Facility
LE_HBa_079_H04-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
774 trimmed for vector and quality, 890 raw
Genbank Accession
DU037159
Sequence
>LE_HBa0079H04_T7_19927 (raw untrimmed)
ATAACCCGGGCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTAGAACAAATGCCCGGTTATGCCAAGTTTATGAAATATCTGGTCACAA
AGAAAAGATCAGTCACTTTTGAGGATGATGATAGACTGCAGCATTGTAGTGCTTTTGCTACCTGATCCCTCGTACAAAACAAAGAAGATCCGGGTGCGTT
CACTATTCCTTGTACAGTTGGTTCATTACATTTTGCGAAAGCATTATGTGATCTGCGGTCAAGCATAAATCTCATGCCCCTCTCGATCTACAAGAAGTTG
GGTTTGGAGAATTCAAAACCCACTGCGATGCGGCTACTGATGGCTGATCGGAAAGTGAAAAGGCCTATAGGGATACTCCATGATGTGCTAGTAAAAGTGG
AGTCATTCATCTTTCCGGCTGATTTTGTTATTCTTGATTGTGAAGTCGATTTTGAAGTGCCTATTATTCTTGGGAGGCCATTCCTTGCTACAGGTAGAGC
CTTAGTTGATATGGAAAAGGGGCAGATGAAATTTTGGTTCAATAATGAAGAAGCGACCTTCAACGTTTGTAGGACAATGAGGCAGAGTGGTGAGCTCCAA
TCGGTATCAGTCATATCCCACAAAGAAAAGATGATGAAAGAGAATGAAGAAAAAAGTGCAAAACAAGAGTTTATTGTTAGGGATTTGGTACTGGTAGACA
GTCTGGGGTGCCTTGTCTTCCGGGCAAGCTCAAGTCCAAATGGACAAGCCACTACTTGATTACCCAAGTATTCCCTCATAAAGCAGTTGATTTAAAAGCC
AAGAGGAAGTGGGGTTCAAGATGATTAAAGAAGAATAAAATCTATTTGGGCATAAACATCAGGGAATAATTGATGAGGCATCCATCTTGA
>LE_HBa0079H04_T7_19927 (trimmed for quality and cloning vector)
AGCTTTAGAACAAATGCCCGGTTATGCCAAGTTTATGAAATATCTGGTCACAAAGAAAAGATCAGTCACTTTTGAGGATGATGATAGACTGCAGCATTGT
AGTGCTTTTGCTACCTGATCCCTCGTACAAAACAAAGAAGATCCGGGTGCGTTCACTATTCCTTGTACAGTTGGTTCATTACATTTTGCGAAAGCATTAT
GTGATCTGCGGTCAAGCATAAATCTCATGCCCCTCTCGATCTACAAGAAGTTGGGTTTGGAGAATTCAAAACCCACTGCGATGCGGCTACTGATGGCTGA
TCGGAAAGTGAAAAGGCCTATAGGGATACTCCATGATGTGCTAGTAAAAGTGGAGTCATTCATCTTTCCGGCTGATTTTGTTATTCTTGATTGTGAAGTC
GATTTTGAAGTGCCTATTATTCTTGGGAGGCCATTCCTTGCTACAGGTAGAGCCTTAGTTGATATGGAAAAGGGGCAGATGAAATTTTGGTTCAATAATG
AAGAAGCGACCTTCAACGTTTGTAGGACAATGAGGCAGAGTGGTGAGCTCCAATCGGTATCAGTCATATCCCACAAAGAAAAGATGATGAAAGAGAATGA
AGAAAAAAGTGCAAAACAAGAGTTTATTGTTAGGGATTTGGTACTGGTAGACAGTCTGGGGTGCCTTGTCTTCCGGGCAAGCTCAAGTCCAAATGGACAA
GCCACTACTTGATTACCCAAGTATTCCCTCATAAAGCAGTTGATTTAAAAGCCAAGAGGAAGTGGGGTTCAAGA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.973591
Expected error %
0.24157
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T12086 Score 154 E Value 3e-36 Identity 14.50% Align. Length 566bp (73.13%) Frame 3
hypothetical protein - fava bean (fragment) dbj|BAA22788.1| retrotransposon-like gene~the first amino acid was determined to be leucine [Vicia faba]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_475041.1| Score 140 E Value 4e-32 Identity 13.40% Align. Length 527bp (68.09%) Frame 3
OSJNBa0042F21.11 [Oryza sativa (japonica cultivar-group)] emb|CAE02304.2| OSJNBa0042F21.11 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0079H04
Clone
Clone name
hba-79h4
LE_HBa0079H04
C01HBa0079H04
P079H04
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found