Clone Read LE_HBa0155J07_T7_200882

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0155J07_T7_200882
Primer
T7
ID from Seq. Facility
LE_HBa_155_J07-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
275 trimmed for vector and quality, 892 raw
Sequence
>LE_HBa0155J07_T7_200882 (raw untrimmed)
TCCAACTTCGGACCCGGGGGAAGCTCTTAGAGTCGACCTNGCAGGCTGGCAAGCTTCTTACTCCCTCAACATTTCCAATACTATTCTCAAGTGCTCCTCA
TGTTCTTTCTTGCTCTTCGAGTATACCAGTATGTCATCAATGAATACAATGACGAAGAGATCCAGATATGGCTTAAAAATCCCATTCATCAAGCTCATTA
AAGAAGCAGGGGCATTCGTAAGGCCAAAAAACATTACTAAGAACTCATAATGCCCATACCTGGTCCGAAAAGCAGTCTTGGGCACATCCGTTGCCCGTAT
TTTTAATTGATGATAACCAGATCTCAAATTGATTTTTGAGAAGGTACAAGCACCTATGTATCTGATCAATACAATCAACAGACGCGAAGAACAGGCGACC
TGAACGTAGCAGGTTCCATTAGTATACACACGTAGGTCAATGAACACTCAAAAAATTTCTATTTTCTTTCTCTCAATCACAAATGCTTTTCCCGTATTCC
ATCTACCGTGCTGATCGTCGCATTTGCTTGCCACCTCTTGAGCATTACCACATGCTCTCCCGCTCTTTCATGATTATTCTAACCTATGTTTTCTTCTTAT
ATCTCACTACTATCTTTCTGATGTACTTTGATGCTCAGTTTTCTAATATCTTTCCTTNATTATCATGTTGGTCTTAATAATATTTTCTTCTCTTATCTTA
TAATATCTTAGTCTACCATTTTACTTCACGTTGGTCTAGCACGAACGTTCNTCGTTGTATGTAACGTCCCCTCTTCTTCCTCATAAACACAATTCTGTCC
TGATCTACTATCTGATCAACTGTTAGATCTGCGGCGGGATGGTTAAGATCGTCGCCTTAGTGGTAAATACCTAGCTCATGAAGAAATATCCG
>LE_HBa0155J07_T7_200882 (trimmed for quality and cloning vector)
CCCTCAACATTTCCAATACTATTCTCAAGTGCTCCTCATGTTCTTTCTTGCTCTTCGAGTATACCAGTATGTCATCAATGAATACAATGACGAAGAGATC
CAGATATGGCTTAAAAATCCCATTCATCAAGCTCATTAAAGAAGCAGGGGCATTCGTAAGGCCAAAAAACATTACTAAGAACTCATAATGCCCATACCTG
GTCCGAAAAGCAGTCTTGGGCACATCCGTTGCCCGTATTTTTAATTGATGATAACCAGATCTCAAATTGATTTTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.955726
Expected error %
0.398818
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB40831.1| Score 148 E Value 5e-35 Identity 25.30% Align. Length 272bp (98.91%) Frame 3
reverse transcriptase [Chrysanthemum x morifolium]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP53268.1| Score 147 E Value 1e-34 Identity 24.90% Align. Length 272bp (98.91%) Frame 3
putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa (japonica cultivar-group)] ref|NP_920981.1| putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa (japonica cultivar-group)] gb|AAM48279.1| Putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa (japonica cultivar-group)] gb|AAL79340.1| Putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0155J07
Clone
Clone name
hba-155j7
LE_HBa0155J07
P155J07
Clone type
BAC
Contamination
none
Estimated length
116,045
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found