Clone Read LE_HBa0079L01_T7_20113

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0079L01_T7_20113
Primer
T7
ID from Seq. Facility
LE_HBa_079_L01-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
571 trimmed for vector and quality, 918 raw
Sequence
>LE_HBa0079L01_T7_20113 (raw untrimmed)
CCCTGACTGGGTACCCGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCATGTTTGTGTAAGTTCCTGCCATATTGACACNCTGATGTGTGAAG
CATGTAAAATGTTTTGTCAAACTCTGTCATGTTGATAATATTGTATATATATATATATAGATCTATCATATATATCGCATGTGATTACAAATTTGTTTGA
CTTGGTCATTTTGCGCTAGTATGATAGTGCCTCCTCCTACAACAACTTGGTGGTTGTGTACTAATTTCCACTTGCTCGTATTTTATATTAAGTACAGGGC
ATCTTCAAGAGGCTATTAGCAGACCTCTCTTAGGAGGCCCAAGATTACTGTGTCGACTTCAACAGTGAGCCACATCTTCCAGGCTTCCATAGAGTTTCTC
TCCTGCTATGTCCACTATTTCCAGACATATACCTTCTGTCTCCTTAGGCTAAAGACTACATTCTTATCCTCTTCCATATGACTTGGTATTCATTTCATAA
TTGTGGCACATGATTTTGAGTTCTTACGTTCATCTGCCGCAAATTATAGTTATGATAATTTTTATATATGAAAGGAACCTCTTATACATACCCTTGACTT
CCGTCCATAACTTTAATGACTTATTTCTTGAATACTTACATAAGGAGGACTGTATTATGCATTATTTGGTCACGATATAAAATAGTAACATAAACACGCT
AGGCTACTCACACAGTTTTAATTCAAACTCAATATATTTTCTAGCAGAACTTGAGGTTGATAACCACTTTTCTTTGAAAATAAATTTTATTTGCCGAAAA
AAACAATTCTTCTCTGGTTCCCCACATGCAGTAACATTTTTTCAAAATGGGAGTCTGTTGATTAAAAATAACTATTAAATTCTTTCAACATTTCAACCTG
GAAAATTTAACCCGGAAA
>LE_HBa0079L01_T7_20113 (trimmed for quality and cloning vector)
AGCTTCATGTTTGTGTAAGTTCCTGCCATATTGACACNCTGATGTGTGAAGCATGTAAAATGTTTTGTCAAACTCTGTCATGTTGATAATATTGTATATA
TATATATATAGATCTATCATATATATCGCATGTGATTACAAATTTGTTTGACTTGGTCATTTTGCGCTAGTATGATAGTGCCTCCTCCTACAACAACTTG
GTGGTTGTGTACTAATTTCCACTTGCTCGTATTTTATATTAAGTACAGGGCATCTTCAAGAGGCTATTAGCAGACCTCTCTTAGGAGGCCCAAGATTACT
GTGTCGACTTCAACAGTGAGCCACATCTTCCAGGCTTCCATAGAGTTTCTCTCCTGCTATGTCCACTATTTCCAGACATATACCTTCTGTCTCCTTAGGC
TAAAGACTACATTCTTATCCTCTTCCATATGACTTGGTATTCATTTCATAATTGTGGCACATGATTTTGAGTTCTTACGTTCATCTGCCGCAAATTATAG
TTATGATAATTTTTATATATGAAAGGAACCTCTTATACATACCCTTGACTTCCGTCCATAACTTTAATGAC

This is probably not a useful sequence.

Problems:
  • High predicted error rate
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.961999
Expected error %
4.52305
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0079L01
Clone
Clone name
hba-79l1
LE_HBa0079L01
P079L01
Clone type
BAC
Contamination
none
Estimated length
79,555
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found