Clone Read LE_HBa0171G20_T7_202136

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0171G20_T7_202136
Primer
T7
ID from Seq. Facility
LE_HBa_171_G20-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
30 trimmed for vector and quality, 866 raw
Sequence
>LE_HBa0171G20_T7_202136 (raw untrimmed)
AACATTTGGTTTTCCATTGGATTCTTTTTAATGACAACTTCCATGCATGCAAAGCTTTAGGATTCTAGTTTATTTCTCCCTTTTAAGATCATGGAAATTT
GCATTTATTATCCATCAAACCACCTCTTTACATTCATTTATGATATTGTA
TTAATATATGCAGTTTTAATTCCCCTATAATTGTGAATCTTCACAACCTT
ATTTAACTAATTCAAATTATGTTTAAGTTTTGTATGGTTAGTCCACCCATATCAATATTCTCATAACATGTAAATCCTCCCCAACTAATTAGCCCAATCT
GTTCATTTGACACTTCTAATACGAAACAACAAATAAGAAAATACTACTATTTATTTACTGGCATTATGAAACAATATACTTTAAATTCTGTCTACAATTA
CTCTCGTTCCTAATTTATTACCTATGAGACAATGCACCAGACTGTTGCAAATCTAGGGAAGTCAGATAATTGGACAAAAACTAAAGTATGTCCACCATGA
AAAATCTCCTATATTTCATTTTCTCTTGAATATATTATTTCCTCTCCATCATATATCCTCTAACTTCAATGATTTTTCGCCTAAATATACTATTTTATCC
GTTGCCCTAATACGTTGTTCTGCCATTCCCCTACTAAATTAAATACACCATTTGATAGGAGTTATATATTTAAAGGTAAATTGACTGCTTAGTCTCTCCT
TGGCTTTTCTCTGTTCGGCCGCGGTCTTCTCTTTTAAACGATCTCAGGATCTATTCATATCTGTTTTGTCACTCACTTTGCATTACTTTTCTTTGTCTTC
ACATTTATCTATTTTCTATCCCGGCCCTCTTCTGGCCGTCCCCCCCCCCTTCTCCCCACCTAACTT
>LE_HBa0171G20_T7_202136 (trimmed for quality and cloning vector)
TTAATATATGCAGTTTTAATTCCCCTATAA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.42338
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0171G20
Clone
Clone name
hba-171g20
LE_HBa0171G20
P171G20
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found