Clone Read LE_HBa0171G20_SP6_263379

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0171G20_SP6_263379
Primer
SP6
ID from Seq. Facility
LE_HBa_171_G20-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
42 trimmed for vector and quality, 977 raw
Sequence
>LE_HBa0171G20_SP6_263379 (raw untrimmed)
TTTTCTTTTTACAGGGAAAAAAATCTCTATCCTCTTCCTCATCTTCATCATACGCATTCTCATTGTCACCCCTGTCACAATCAGGATGAATGTGTTCACT
CTTTTCTTCATCAGCCTCTTGTTCTCGAGGACTTCCATCGTTGGAT
AGGTTGCCGCTGTATCCATGAACAAATTCTCCTGATTGGACTCCTTATCATCAG
TAGATAATGCAGTTGAGCTCAAAGACATTCTTCAGCACAATATTTGAAATAGTTTATACCGAGAGAATACTGACAAACATTCTGAATTAACAACTCAACT
GATATCATATAATTGACTAATATTTTGCCTCTTCCTCTAATATGCACTTCCACATTATTCCTGTTGATCTTATTATACCAACTTTATTTTTATCTCTTTA
CTTTGTATTTCATGTGTAGAACGACCATAAGTAATTGTCCACAAACTTCTTGCCTATCTTTTATTAAATACAATACTTCATTGTTTTATTTTCTCATGAT
GTTTTCATTCGTTAACATTATAGTTTTACTTGTGCTCATTTTCTTATCTAAATACAAATGTACATCCCTTATAATTTATAAATTGTCTTCTTCTCTCTCA
TACATCTTTTCATTATTTCCTTGTTGCACTGTATTTCATTCTTATATCTAATGTCTTTTTAAATTTTATTTTTTCTTTTATTCTTTAGCTACTACTCTTT
TCTTGTTATATTTCTATTCCCCTTATTTTTATGTTCTCTTTTTTTATACTACTTTCTATTCTTTCCTTTTATCTACGTTTCTTTTTATTAGTCTTCTACT
TTTACTTTCTTTACTTTACTTTCACGTTTTGTTCTATTGTTTTCATCTTTCATATTGTTTTTATTATCTCCTCCATTCTAACTTTATCTCTTTTTTTCTC
TTCCACTTTTATATTATATCGTGATTACTCTTTTCTACAGCTTTTCTTATTCGTTCATTGCTTCTGCTATGCTTATG
>LE_HBa0171G20_SP6_263379 (trimmed for quality and cloning vector)
AGGTTGCCGCTGTATCCATGAACAAATTCTCCTGATTGGACT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.864631
Expected error %
1.48164
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0171G20
Clone
Clone name
hba-171g20
LE_HBa0171G20
P171G20
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found