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Clone Read LE_HBa0174N09_SP6_202997

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0174N09_SP6_202997
Primer
SP6
ID from Seq. Facility
LE_HBa_174_N09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
395 trimmed for vector and quality, 754 raw
Sequence
>LE_HBa0174N09_SP6_202997 (raw untrimmed)
CCTTTTTTTAACGACCGAACGGGGATTAGAGGTTGATCGGAGCTACTGTTCACGTGATAGAGAGGCTTCCTCCATCCATCTCTGTAAATGGGAAAATTTT
TCTTGGGCATGTTGGCTTTTACCGGAATTTTATTAATGACATTTGAAAAATTCAACATCCTTTGTGCAAACTACTCGAGAAGGAATGTAAGTTCTATTTC
TATGAATCCTGTGTGAAAGCATTTGGACAGTTGAAGGAGAAGTTAGTGTCCTCACCCATAATCAATTCACCGGATTGGAGTGATTTATTTGATGTTCTGT
GTGATGCATGTGGGGTTGCACTTGGTGTGGTATTGGGACAACGAATGGATAAAATCCTTCACCGTTTTTGCTATGTCAGTAAAGCCCTAAATGAATCTCA
GAAGAAATATACGCTAACTAAATAAAAACTTTTTATGGTGGTGTTTACATTAAAAAAGTTTCTCTCCTATTTGCTTAACACGAGCGTCATAGTGCATACA
GTACCATTTCGCTTTTGAGTGTCTTGTGGGCATCAAATGATGCGAAGCCCAATGTTAATCTGATGGGTACTTTTGCCCGCTGACGTTTTACATTCGGTTA
AAAGAACAAAAGTGGGAATCAGAATACAGTTCTCATTCTCTTTTTTAGAATTTAGGATCATTCCACTCCCTTATTTGCTATTAAAGGGTGATGTTCATTT
TGCTTTTACCTTAATTAGCTAGGATTGGACATTTACTTTGAAATATATCCTCCT
>LE_HBa0174N09_SP6_202997 (trimmed for quality and cloning vector)
ATAGAGAGGCTTCCTCCATCCATCTCTGTAAATGGGAAAATTTTTCTTGGGCATGTTGGCTTTTACCGGAATTTTATTAATGACATTTGAAAAATTCAAC
ATCCTTTGTGCAAACTACTCGAGAAGGAATGTAAGTTCTATTTCTATGAATCCTGTGTGAAAGCATTTGGACAGTTGAAGGAGAAGTTAGTGTCCTCACC
CATAATCAATTCACCGGATTGGAGTGATTTATTTGATGTTCTGTGTGATGCATGTGGGGTTGCACTTGGTGTGGTATTGGGACAACGAATGGATAAAATC
CTTCACCGTTTTTGCTATGTCAGTAAAGCCCTAAATGAATCTCAGAAGAAATATACGCTAACTAAATAAAAACTTTTTATGGTGGTGTTTACATT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.958484
Expected error %
0.852545
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38730.1| Score 139 E Value 3e-32 Identity 19.10% Align. Length 386bp (97.72%) Frame 2
putative reverse transcriptase [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF63114.1| Score 126 E Value 2e-28 Identity 16.40% Align. Length 383bp (96.96%) Frame 2
Hypothetical protein [Arabidopsis thaliana] pir||B96502 hypothetical protein F28H19.8 [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0174N09
Clone
Clone name
hba-174n9
LE_HBa0174N09
C03HBa0174N09
P174N09
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found