Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0174N09_T7_202998

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0174N09_T7_202998
Primer
T7
ID from Seq. Facility
LE_HBa_174_N09-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
730 trimmed for vector and quality, 785 raw
Sequence
>LE_HBa0174N09_T7_202998 (raw untrimmed)
CCTGGGTCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCTAACCTCCATCATATGCCATCTTTTTTAAAAGATTCGTGCTATATTGACT
TCACTTTGAGAACATAAGTTATATGCAGATCATATCAATTTTGAACTCATATAGCTTTACAATGTCGCTGCCATATTTTACAATGTATGCCATTTGCTAA
AGTCTTGCTCATTGTACCAAACATGTGCTAATCCTAATAGACTTTGAATGAATAATCTCATTCGTATGTATTCAACATGTCCATTACCAACCAATATGCT
GCAATAGTTATTTAAGTGAGCAATGGGATCTCCTTTCCCATTGAAAGAATTGAACTTAGGAACTGTGTGTCCTGGCATAAGTTCAACATTTGGATGCACA
CAAAAGTTCCCATACTTTAAACTCTGATAAATTCTTGAGAACAACTCTTCATCAAATGATTCTCTCATATTGTGGAGAACTTTTCCAATATCTTCATGAT
AAATTTGCTGAATATCCTCCTCACATCTAGAATATGGAAGAGCGGATAATTTGTTGTGCATTTTTAATATAATATGGACGAGCAGATATTTCTTTGTGCT
TTATTCATTGTAAGGAAATTTAATTGTGGGAGGATGAATATTTGGCATCACAGTGACTTGAACATTATTGGGATTTATAGTGCATACTGATGGCATTCGT
CGAGAGATTGTATAGATAGAAGCTGAGGGGGAGATAAGGTTAGACAAATACTGTGAGTTGAGCTGGAAGTTTTAGTAGTTCTACA
>LE_HBa0174N09_T7_202998 (trimmed for quality and cloning vector)
AGCTTCTAACCTCCATCATATGCCATCTTTTTTAAAAGATTCGTGCTATATTGACTTCACTTTGAGAACATAAGTTATATGCAGATCATATCAATTTTGA
ACTCATATAGCTTTACAATGTCGCTGCCATATTTTACAATGTATGCCATTTGCTAAAGTCTTGCTCATTGTACCAAACATGTGCTAATCCTAATAGACTT
TGAATGAATAATCTCATTCGTATGTATTCAACATGTCCATTACCAACCAATATGCTGCAATAGTTATTTAAGTGAGCAATGGGATCTCCTTTCCCATTGA
AAGAATTGAACTTAGGAACTGTGTGTCCTGGCATAAGTTCAACATTTGGATGCACACAAAAGTTCCCATACTTTAAACTCTGATAAATTCTTGAGAACAA
CTCTTCATCAAATGATTCTCTCATATTGTGGAGAACTTTTCCAATATCTTCATGATAAATTTGCTGAATATCCTCCTCACATCTAGAATATGGAAGAGCG
GATAATTTGTTGTGCATTTTTAATATAATATGGACGAGCAGATATTTCTTTGTGCTTTATTCATTGTAAGGAAATTTAATTGTGGGAGGATGAATATTTG
GCATCACAGTGACTTGAACATTATTGGGATTTATAGTGCATACTGATGGCATTCGTCGAGAGATTGTATAGATAGAAGCTGAGGGGGAGATAAGGTTAGA
CAAATACTGTGAGTTGAGCTGGAAGTTTTA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.949326
Expected error %
0.415437
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39964.1| Score 78 E Value 2e-13 Identity 10.30% Align. Length 359bp (49.18%) Frame 3
putative gag polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0174N09
Clone
Clone name
hba-174n9
LE_HBa0174N09
C03HBa0174N09
P174N09
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found