Clone Read LE_HBa0140G03_T7_254490

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0140G03_T7_254490
Primer
T7
ID from Seq. Facility
LE_HBa_140_G03-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
716 trimmed for vector and quality, 978 raw
Genbank Accession
DU082520
Sequence
>LE_HBa0140G03_T7_254490 (raw untrimmed)
NGGATTTTNNNNNNCCGCTGTCGGGGATCTCAGAGTGACCTGCAGGCATGCAAGCTTCAAGTTCTTCAGAAGACCAAGTTCTCGAGGGATTTCTCCTATT
AGTTGGTTTGAAGCAAGAGTCAAAAACTCCAAATTAGAAATATTTGAAATGGACTTCGGAATGCTCCCAACCAACACATTGCCACCAAAATCAAGAACTT
TGAGCCTTGAGAATAAACCAATATTTTCGGGGATTTTCCCCGAAATCATGTTGTTTGAGAGATCCAATGTCTCGAGAAGTGGGATTCTCGAGCCTTGAGG
AAGTAGACCTGTGAAGTTATTGTTACTAAGATTGAGAAATCTCAGCGCCAAACAAGTTGAGATATTACTAGGAATTTCTCCATAGAGTTGATTATTCGAG
AGATCAATCAATTCAACGTATGGAAAGTTGAAAATCGTCTCGGATAATTTTCCAGATAGGTTCTTCCCTGATAGCTCAATTTTTGCAACATGCAACAAGT
CATCACAAACAACACCATTCCAATGGCAAAAAGATTGAGACCGCGGAATCCAATCATGAAGAGATCCTAATGGATCCTTCATTGATGTTTTCATCGATAA
AAGTAGCTCGAGCTCAGAGCTACTTTTGACTTGCTGCATGTAAAATAGCACGAACACGATCAAACACATGATCGATTTTGATCCTACGTTGGCCATCTTT
TTCTCTAGCTAGATATGAAAGCTCTATATCATAAGTTGCATGGAAAAAGGGGTAACTAAATAAAGCTTGAACAACTTTTTGCTAAAAGGAATGATCCTTC
ATTTTCCTGTCACAAACATGAAAAAAAAATTATCTGTTATATAACAAAAACCTGGGGATTTGGTGCTTTACAAAAAAAAAAAATTTCCTGAAATAAATAG
AAAAAAAAATGTTGGGACTAAATTTAAAATAATCTCCACTTTCTATGTGAAACTTTTATTACCAATCTGACTTTTAAT
>LE_HBa0140G03_T7_254490 (trimmed for quality and cloning vector)
CTGCAGGCATGCAAGCTTCAAGTTCTTCAGAAGACCAAGTTCTCGAGGGATTTCTCCTATTAGTTGGTTTGAAGCAAGAGTCAAAAACTCCAAATTAGAA
ATATTTGAAATGGACTTCGGAATGCTCCCAACCAACACATTGCCACCAAAATCAAGAACTTTGAGCCTTGAGAATAAACCAATATTTTCGGGGATTTTCC
CCGAAATCATGTTGTTTGAGAGATCCAATGTCTCGAGAAGTGGGATTCTCGAGCCTTGAGGAAGTAGACCTGTGAAGTTATTGTTACTAAGATTGAGAAA
TCTCAGCGCCAAACAAGTTGAGATATTACTAGGAATTTCTCCATAGAGTTGATTATTCGAGAGATCAATCAATTCAACGTATGGAAAGTTGAAAATCGTC
TCGGATAATTTTCCAGATAGGTTCTTCCCTGATAGCTCAATTTTTGCAACATGCAACAAGTCATCACAAACAACACCATTCCAATGGCAAAAAGATTGAG
ACCGCGGAATCCAATCATGAAGAGATCCTAATGGATCCTTCATTGATGTTTTCATCGATAAAAGTAGCTCGAGCTCAGAGCTACTTTTGACTTGCTGCAT
GTAAAATAGCACGAACACGATCAAACACATGATCGATTTTGATCCTACGTTGGCCATCTTTTTCTCTAGCTAGATATGAAAGCTCTATATCATAAGTTGC
ATGGAAAAAGGGGTAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.958121
Expected error %
0.190873
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g25790.1 Score 172 E Value 2e-43 Identity 53.80% Align. Length 512bp (71.51%) Frame 2
68415.m03095 leucine-rich repeat transmembrane protein kinase, putative
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g06940.1 Score 126 E Value 1e-29 Identity 42.40% Align. Length 509bp (71.09%) Frame 2
68418.m00784 leucine-rich repeat family protein contains protein kinase domain, Pfam:PF00069; contains leucine-rich repeats, Pfam:PF00560
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAC42251.1| Score 172 E Value 1e-41 Identity 53.80% Align. Length 512bp (71.51%) Frame 2
putative receptor-like protein kinase [Arabidopsis thaliana] pir||G84652 probable receptor-like protein kinase [imported] - Arabidopsis thaliana ref|NP_180150.1| leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB11152.1| Score 126 E Value 5e-28 Identity 42.40% Align. Length 509bp (71.09%) Frame 2
receptor protein kinase-like protein [Arabidopsis thaliana] ref|NP_196311.1| leucine-rich repeat family protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0140G03
Clone
Clone name
hba-140g3
LE_HBa0140G03
C08HBa0140G03
P140G03
Clone type
BAC
Contamination
none
Estimated length
99,219
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found