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Clone Read LE_HBa0165B06_T7_255523

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0165B06_T7_255523
Primer
T7
ID from Seq. Facility
LE_HBa_165_B06-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
382 trimmed for vector and quality, 945 raw
Sequence
>LE_HBa0165B06_T7_255523 (raw untrimmed)
TCGGGGGGGCTCATAAAGATCTGCTGGAGGCAAGCACTCTTAATGAGTTTATACCTATTAGCTTAAGCAATTTTACTAGTAAAATCATTTCAAAGCGAAT
TAGTTCTAGACTGGTCCCATCCTTCCTCCCTTGATTTCTACTAAACAATCTGGGTTTGTCAAAGGTAGAAACATTTAAGAGAATATCATCCATCAAATCA
AGGAACCTAACATTGGGAGTAATGTAATCATGAAGCTTGACATGGTCAAGGCCTATGATAGAGTTTCTGAGAAAGATGGGGTTTGTTGAGGCATTCATTG
ACATGGTTTGGAGGGGCATGATTAACTATTGGTACTCTATTAGTGTCAATGGTAAGAGATATGGTTTCTTCCACTCTACTAGAGGACTCAAGAATGGTGA
CCCCTTATATCCTGTTCTATTTATTTTAGGAGCAGATGTACAATCATGATCACTCAACAGACTCCACGATCACCAACACAATCATGGGTTATACATGGAA
AGAAATCTGTCTCATGTTAATCCCCTATGTTTTATGCACATGATATATTTCTCATTCCATCTAGGATTTCTCAATACCTATTAACTCATTTAGAAACCCA
TTACACTCTTCTCACTAATATTTCAAGCCTTTTCTCTTTCCAATATCTAATCCATTTCCTTGCTCATTCCATTCTCTTTTTATAATCTTCCATGCAAGTG
ATACAAAACCACTCCTAGTTACTCCATGTTTACCTCTTCTTTCTCTATTAAACCTCACTCATTTTTACACCTTAGAATTTTCTTTTCCGATACTTCTCTT
ATAACATATTACTCTACACCCTCATCTCTGATCTTTGTTTCGTCAATCTCCACTTTTCTATCTTCTCATTTATCATTCTCCCCTATCACTTTGAATCTCA
TTCCCACTTTACTATCTCCCATCTATCATTTTACTATTTTATTTC
>LE_HBa0165B06_T7_255523 (trimmed for quality and cloning vector)
CAATTTTACTAGTAAAATCATTTCAAAGCGAATTAGTTCTAGACTGGTCCCATCCTTCCTCCCTTGATTTCTACTAAACAATCTGGGTTTGTCAAAGGTA
GAAACATTTAAGAGAATATCATCCATCAAATCAAGGAACCTAACATTGGGAGTAATGTAATCATGAAGCTTGACATGGTCAAGGCCTATGATAGAGTTTC
TGAGAAAGATGGGGTTTGTTGAGGCATTCATTGACATGGTTTGGAGGGGCATGATTAACTATTGGTACTCTATTAGTGTCAATGGTAAGAGATATGGTTT
CTTCCACTCTACTAGAGGACTCAAGAATGGTGACCCCTTATATCCTGTTCTATTTATTTTAGGAGCAGATGTACAATCATGA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.956216
Expected error %
0.338635
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAD45561.1| Score 50 E Value 2e-13 Identity 39.20% Align. Length 288bp (75.39%) Frame 2
reverse transcriptase [Elaeis guineensis]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAD45562.1| Score 47 E Value 9e-13 Identity 39.20% Align. Length 288bp (75.39%) Frame 2
reverse transcriptase [Elaeis guineensis]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0165B06
Clone
Clone name
hba-165b6
LE_HBa0165B06
C08HBa0165B06
P165B06
Clone type
BAC
Contamination
none
Estimated length
122,554
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found