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Clone Read LE_HBa0165B06_SP6_262369

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0165B06_SP6_262369
Primer
SP6
ID from Seq. Facility
LE_HBa_165_B06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
413 trimmed for vector and quality, 1016 raw
Sequence
>LE_HBa0165B06_SP6_262369 (raw untrimmed)
CCCCGGCTAGTTTCNCNANAANTCGGACCATTCAAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCCATATATCATCAATAAATCCGATCACG
AAGAGGTCCAAATACGGCTTAAAAATCCCGTTCATCAAGCTCATGAACACAGCAGGGGCATTCGTAAGACCAAAACGATTTGGTCCGTCGCCTCAGCCTG
TTTTTTTCAGAAATAAAATCTGCTGCTCAAAACTACTAAAAAGGTCGTTACATGTGGAAGAAAGGGTATGTCTCCAAGTATAGAGGTAAAATAACCAATA
CCTGCAGGGTGAAGTATGCAGTCTAAGAATGAAACTTCCAAATGTTGAATAGTACATTTCCACATCTCCAATGTCCTGCAAAGTGGAATGATTTACTACA
AAAGAGTAAGAGGTGCATTCACTGCAAAAAAGTGAGCATGGTAACATGGAATAAACCACAAGATCAATAGATCAAGATAAATTCAGATGGAAGTGCACTC
ACTAACCCAGCAAATATTTGGGGCTTCCGGTATTCTGAGGAACAAATAAGGCAAGCTATTTGTGGTCCTTTACAACAACTTGTAGAGGGAACTAAACTAT
AGAACCTGAAATTGAAAAATGCCCTATTTTGGTATAATTTGAGGCACTTTGATCTTGCTCTACTGGAACATTTTTTCGGGAAACTTGAATTCCCATTTGG
TGGCTCCCATCGAGAATTATAACTAAGATTCTCCCTCCAAAATGGTAGATTTCTTTCCCTTATTATTTGTAAAAATTTGCTAAAATTTTTTCCTCTTACT
AGCAAATATTTTCTAAAGAAAAATCATGGTATATTAGTAGAAAAAATCTTGTGGTGGTTATTCCATATTTGTTAAAACTTAATAGTAATAAAATGCTTCT
TATTTATACAAGTTTATTTTAATGGGAGTTCATTTTCTCATATTAAATAATAGGAGATAGGTGTCATTTGATCTTTTCCTAGACTGGTTTGATAGATACT
CCAATTTTCTAAGGAG
>LE_HBa0165B06_SP6_262369 (trimmed for quality and cloning vector)
AATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCCATATATCATCAATAAATCCGATCACGAAGAGGTCCAAATACGGCTTAAAAATCCCGTTCAT
CAAGCTCATGAACACAGCAGGGGCATTCGTAAGACCAAAACGATTTGGTCCGTCGCCTCAGCCTGTTTTTTTCAGAAATAAAATCTGCTGCTCAAAACTA
CTAAAAAGGTCGTTACATGTGGAAGAAAGGGTATGTCTCCAAGTATAGAGGTAAAATAACCAATACCTGCAGGGTGAAGTATGCAGTCTAAGAATGAAAC
TTCCAAATGTTGAATAGTACATTTCCACATCTCCAATGTCCTGCAAAGTGGAATGATTTACTACAAAAGAGTAAGAGGTGCATTCACTGCAAAAAAGTGA
GCATGGTAACATG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.96351
Expected error %
0.487393
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB40831.1| Score 77 E Value 2e-13 Identity 26.10% Align. Length 137bp (33.17%) Frame 3
reverse transcriptase [Chrysanthemum x morifolium]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT85839.1| Score 74 E Value 1e-12 Identity 23.20% Align. Length 137bp (33.17%) Frame 3
reverse transcriptase [Vigna radiata]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0165B06
Clone
Clone name
hba-165b6
LE_HBa0165B06
C08HBa0165B06
P165B06
Clone type
BAC
Contamination
none
Estimated length
122,554
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found