Clone Read LE_HBa0165L19_T7_255911

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0165L19_T7_255911
Primer
T7
ID from Seq. Facility
LE_HBa_165_L19-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
514 trimmed for vector and quality, 945 raw
Sequence
>LE_HBa0165L19_T7_255911 (raw untrimmed)
CTGGTCGGGGTCTCTGAGTCGACTGCAGGCATGCAAGCTTCTGGTGGAGTTGATAACATACTGAAAATGCTCTTGGAGCACGGACATGTAACTGAGAGAA
ACCCATACGATATACTGGAAGATATCAGAACTGCCCTGGCACAGAAGTTTCCCTTGAGTAAGAACCCTGCGGGAGCAGATGAAAGTGCAATAGGTACTGA
TGTTACATGTTCTCCCAACAATGGTGACTGTAAGGAGATATATACAGGAGCTGGTGATAATGTTTCATCAGAAAGAAAGTGTGAACTAGACATGTTGTCA
TTTATGGGTACATCGATTAATAAAGTTATTGATATCATAGAAGGAATCAATATACCCTCGACAGATGATAGTATTCCAGAAATCTTATCTCACAATGGTA
ATGGACTTCTACCATATGAAAGTGCATCGAAGGAGACAGCCTACATGGTTCGTGTTTTCCAGTGGAAATCTTCAGAACTTTCTGTTATTCTTCAAGAATT
TGTCCAAACATGCCGTGATTTATTGAATGGGAAGGTTCATATTGAGAAGTTCACTGAAATATTAACTCGGACCCTGGAATGGATTGTTAACCACTGTTTT
TCCTTTCAGATGTTTTCAGCATGAAGGATACTATGAAAATCCCTTTGACTGGGGAATTGCAACTGGGGTGATTAATCCCACCTTTAAATTTGTATACTTC
TGAATTTAGCTGTAAATCCTTTTTCCTCTCCTGGTTTTACTCCTGTCTCATGGATCTTGTCTGTTTCCCTATTATATATTTCTTTCCATCTTTTTTATTT
TTATAAATCCTACTCTTTCATTAGCTTTCTCTTTCACTATGAATCTTCTAATATTTTATTCTTTTTCGTTCTATTTTTTTCTTCATATTCTTTCTTGCCG
TCAAAAATGTTCCTCATATTGTTCAGTCTCTTGCTTATTTCTTAA
>LE_HBa0165L19_T7_255911 (trimmed for quality and cloning vector)
CTGCAGGCATGCAAGCTTCTGGTGGAGTTGATAACATACTGAAAATGCTCTTGGAGCACGGACATGTAACTGAGAGAAACCCATACGATATACTGGAAGA
TATCAGAACTGCCCTGGCACAGAAGTTTCCCTTGAGTAAGAACCCTGCGGGAGCAGATGAAAGTGCAATAGGTACTGATGTTACATGTTCTCCCAACAAT
GGTGACTGTAAGGAGATATATACAGGAGCTGGTGATAATGTTTCATCAGAAAGAAAGTGTGAACTAGACATGTTGTCATTTATGGGTACATCGATTAATA
AAGTTATTGATATCATAGAAGGAATCAATATACCCTCGACAGATGATAGTATTCCAGAAATCTTATCTCACAATGGTAATGGACTTCTACCATATGAAAG
TGCATCGAAGGAGACAGCCTACATGGTTCGTGTTTTCCAGTGGAAATCTTCAGAACTTTCTGTTATTCTTCAAGAATTTGTCCAAACATGCCGTGATTTA
TTGAATGGGAAGGT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.970581
Expected error %
0.152643
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g23360.1 Score 72 E Value 2e-13 Identity 10.30% Align. Length 476bp (92.61%) Frame 1
68415.m02790 transport protein-related contains Pfam PF05911: Plant protein of unknown function (DUF869) profile; weak similarity to Intracellular protein transport protein USO1 (Swiss-Prot:P25386) [Saccharomyces cerevisiae]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0165L19
Clone
Clone name
hba-165l19
LE_HBa0165L19
P165L19
Clone type
BAC
Contamination
none
Estimated length
120,252
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found