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Clone Read LE_HBa0175B09_SP6_263601

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0175B09_SP6_263601
Primer
SP6
ID from Seq. Facility
LE_HBa_175_B09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1269 raw
Sequence
>LE_HBa0175B09_SP6_263601 (raw untrimmed)
TCGCTGCGTAGTATACGTGTCACTACTTATCACAACACTGAACCCCTGGACACAAATCCCCACTTTCTAAGTGTACACTTACGCCTAAACTCCCTCCCAT
GTTCAGAGAGGTCTCCCATTCCTCACCTGAATAGCTCAAACTTATTGCATTCCTCTCAAATCACTAATTCCATATACCATGTCTTCATTGACAAATTATT
GCCACACTTCTCCATTATAATGATCTAAACATCTCTTGACTCACTAATCCGAGTCCATAATACTTCAGCTTTCCTCAAAGTACCCTCGCAAACTACTTGT
TGGTTATCACCAAATGATACTCATCTCCTAACCATAGATTATCAATCCTTCTATCTCATCTTAATTAACTCACATACACTGATCCCCATCTTACTGTATC
CAATACTTTATCTCTAATTAATATATGAGATCTCTAGCTATTGTCATCAATATCATAATCATTTCCGACCCTACCTTCCCTGTTCATTGTCTCATGAACA
TTAATACACTATTACTCATCTCTCGGCCATCTATCCTTTATCAGTCTAGTTTACCTGTAATACTCTTTTTAAATACGTTTCAAACTTTCTCTTCTTTTCT
CTCACGCATTAGACCTATTTGGTACCATCTATATTCCCCTTCCGTACCAAACACCAGCTTTCGTACAACGCCTCTCGACTACACTATATTGCCAATACCT
ATAACTCACTTTATCAACGTATACTTTAAAATTACTTATAATCTCTTAGTCTTCCATCTCTCATCCATCTGTCACCTTACACTTCTACTCCCTCATATGC
TCGCCTCTGCCCTTCACTTGATTTACATGTTCTTCATCTATTCCTGTCCACATCCATTCTTTTTCCACATCCCTCATATTCTAATCTCATATCATCCTTT
CTATACGTTTTACTTATCAACGTCTCTTTCTATTATTCCCTCCATCTAATCTCTTCTCACATTTATTCATCCTGCTTACCTCACTCTTTATATAATCATT
CTTCTCACTTTATCTCTATTCCCTCGCATCCTAACACGCCACTTCATTCTTGATCCTCCTCACTCACTTACCATTCTTAACTTACCTCCCGACCGCTTAA
TCTCTACCCTCCACTACCATTCGTCTAGAATTTCTACCATCTCCTCCCCTCACTTCTGATCTTCTGCCCATAACCTCTCCCTTACTATATAACTGTTCTT
GCTTTTAACACTTGTGCGCCATATCTTGCTCATGAATCTTTCTCTACCACTCCACTCCCTTCCTCTCAC
>LE_HBa0175B09_SP6_263601 (trimmed for quality and cloning vector)
T

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0175B09
Clone
Clone name
hba-175b9
LE_HBa0175B09
C03HBa0175B09
P175B09
Clone type
BAC
Contamination
none
Estimated length
116,604
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found