Clone Read LE_HBa0096D22_T7_28987

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0096D22_T7_28987
Primer
T7
ID from Seq. Facility
LE_HBa_096_D22-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
535 trimmed for vector and quality, 836 raw
Sequence
>LE_HBa0096D22_T7_28987 (raw untrimmed)
CCGGGGGGGGGATCCTCTAAGAAGTCGACCTTGCAGGCATGCAAGCTTCGTCTATCAACTCAATAACTATGTAAGTTATCGCGTTTATACTTTCTTGATA
TCATGCATGTGCATTTTTTTCCCTCTTATTAATACGTATTCGATGATAGGGATTCAAGAAGATTGGACTCCAGAAATGGGAGTATGGACATTATTGGTTT
CAAGCAGGGAAAAAACACTTGATATCTAACATAAAAAGACGAACAAAAAATCTAAATGCTCGTAGAGATTTTAATCAAGAAAATTACTTTTACGGAGTAG
GGGAAGAGATGAGAAGCCAGAGAGATCTCAACATTACGTTGAAGTCAGAACTCGAGAAGTTGAAAGAGAGACAAGATGATATGATTAAGGGAATCGCGTC
TTTAAAGGAATATCTGGAGAGATCAGAGGCAGAGTCAAGGAAATTCCTCTGTTTTTTGGCATAAGCAGTTAAACAAGTTGTTGCAACCAAACGTGGTACG
AAACGTGATGTAGAAGTTAGAGATGTAATTACGAGTAAACGTAGAGCTGAGGATGTAACGGGGAGTAGTAAGAGCTCGGAGAAGAATTGAAGATAGAAGA
ATGAAGCCTATAACATCTAGTATTTCCATTCTTGAGATTCTCTTGCTTCTTTGTTTTATTTTTACTTTTGTTGCTTGATTTTTCCTCGAATCATTATTGG
GATATTTTTTAGTTGTTTGTCTGGGTCTGGATATTTGCAAATCGTGATTATGTTTATTCTTCTGTTCTAAGATTGAACTTTTTTATTATCTTCTATTCTA
TTTTTGTTGAATTTTTTGTTATCTTTCTTTGGTTTG
>LE_HBa0096D22_T7_28987 (trimmed for quality and cloning vector)
CAGGCATGCAAGCTTCGTCTATCAACTCAATAACTATGTAAGTTATCGCGTTTATACTTTCTTGATATCATGCATGTGCATTTTTTTCCCTCTTATTAAT
ACGTATTCGATGATAGGGATTCAAGAAGATTGGACTCCAGAAATGGGAGTATGGACATTATTGGTTTCAAGCAGGGAAAAAACACTTGATATCTAACATA
AAAAGACGAACAAAAAATCTAAATGCTCGTAGAGATTTTAATCAAGAAAATTACTTTTACGGAGTAGGGGAAGAGATGAGAAGCCAGAGAGATCTCAACA
TTACGTTGAAGTCAGAACTCGAGAAGTTGAAAGAGAGACAAGATGATATGATTAAGGGAATCGCGTCTTTAAAGGAATATCTGGAGAGATCAGAGGCAGA
GTCAAGGAAATTCCTCTGTTTTTTGGCATAAGCAGTTAAACAAGTTGTTGCAACCAAACGTGGTACGAAACGTGATGTAGAAGTTAGAGATGTAATTACG
AGTAAACGTAGAGCTGAGGATGTAACGGGGAGTAG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.954455
Expected error %
0.414551
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g54070.1 Score 67 E Value 6e-12 Identity 9.60% Align. Length 437bp (81.68%) Frame 1
68418.m06731 heat shock transcription factor family protein contains Pfam profile: PF00447 HSF-type DNA-binding domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g22830.1 Score 64 E Value 7e-11 Identity 10.50% Align. Length 428bp (80.00%) Frame 1
68416.m02877 heat shock transcription factor family protein contains Pfam profile: PF00447 HSF-type DNA-binding domain
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0096D22
Clone
Clone name
hba-96d22
LE_HBa0096D22
C11HBa0096D22
P096D22
Clone type
BAC
Contamination
none
Estimated length
125,379
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found