Clone Read LE_HBa0097M11_SP6_30164

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0097M11_SP6_30164
Primer
SP6
ID from Seq. Facility
LE_HBa_097_M11-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
7 trimmed for vector and quality, 855 raw
Sequence
>LE_HBa0097M11_SP6_30164 (raw untrimmed)
AATACACCGGGAGGTCTAGAGAGTATGAGAACCCTAAGTCTCGTCAACTCCCTAACCTTAAAAAAATAGCTCTGCGCCTTTTGAAAAATCTTGTCACAAC
CTTCTCTAACACAGAAATTGTTTCCACGTGCCCAAAGATACTTTTAACACACAGACAGACAGAGACGTGGGTAAGCGACTCTATTACATACAAAACAATG
AAGCAGAATATAGACTAGATTTGAGGCAAAATTAGAATATTCAGCTATTTCCTTCAAGTTAAGTATCCTATTACACATTGGTGGCGGACCGGGTGGTTCT
TCTCGATCACTATTGATAGGAATTC
CTTCTGAACACAGCGTGCTGAGCGCCCTACAACAACACCCCACTCTCCAACATAATGAACTGTTGTGTCTCTCCC
AACAACCACCGTTAAATGATGGATTTCGGGGTGTGCGTCCTCCCACCCCCGCTGGGGAGTCTGGAAGATTATATTGTTGCTGCAGGCTATCTATCTCACG
TTCCCGGCACAGGGCAAGGGTGCTAAAAACAAGCCAATGTACTGTAAGAATACCCCGTATAAACTGTGTTGTATAGTGTCCAAAAAGCTAAAAAAAAGTA
AAAATAATATTCACACCGCTATACCACAAGCTATAAACGGCNNNNNNNNTTAGTGATTAACACATGAGGTTTTACTTTTTGAGGAGCCTTGATTCATAGC
TACCTTCCATGAACATTCCCATTTATCAATATGCGATTGGTATTAATTAGAAGAAAACCTCAAACTATTATTTTAATTTTTGGAACCCTGCAACATCAAA
CATCTAAACAACCCCCGGTGTTGGTGTACGGACTCTTCATTTTTTACATGGAACT
>LE_HBa0097M11_SP6_30164 (trimmed for quality and cloning vector)
CTTCTGA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.19787
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0097M11
Clone
Clone name
hba-97m11
LE_HBa0097M11
P097M11
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found