Clone Read LE_HBa0196I06_SP6_302842

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0196I06_SP6_302842
Primer
SP6
ID from Seq. Facility
LE_HBa_196_I06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
506 trimmed for vector and quality, 1008 raw
Genbank Accession
DU090428
Sequence
>LE_HBa0196I06_SP6_302842 (raw untrimmed)
NCCCCGGAGTTGTCTGCGTCTTTCTGTATCATGTAAAGAAGTGCCTAGGTGATCCATCATCAATTCTACTGGCAGAAAGATTGGGGGTCGATGAAGACTT
GCCCTATGATGAGGTACCTGTTGAGATCTTTGACAGACAGGTCAAGCAGCTGAGAAACAAAAAGATTGCCACTGTAAAGGTATTATGGAGTAATCATTTT
ATTGAGGGTTCTGCGTGGGAGGTCGAGGCCGATATGAGATCCCTCTATTCCCATCTTTTCAATCCTTGAGGTTAGATTCCATACTCTTATGTCGAAGTGT
CCTTATCTATCCATTCTTTGTTGCTACTGCTTGACTGTGCAAAGTGGTTATGTTATGATATGACTGGTGTTATGATAGATTATAAGAAGTGTCATTCGGG
GACGAATGTTCAAAAGGGGGGGGGGGATAATGTAACAACCATAAAAAAGGATATGATAAGTAATGCTTAATGTGTCTAGAATTCCTATGATTAGATCGGG
TTCACACAAAATTGATGCGCGTAGAACCAGACCTCTGAACCCTTGCGGCTTCCAAGCCAACCAACTTGGGGAGTTAGTTGAGCTATGAAAGGTTGGGTTC
CTCCAGGTAGGGCTTTCCGAATATTAAATATTCTCTTGGATGACTCTTTATTGGACCTAAAAATGGGGAAATCTTAATTATTCGAAGGTCTTAGGGAAAA
ATTGGTCTTCTTTCCTGCCCCCGGGTTGTTACCCTTTTCCTCTCTATATATGTACCTCATTTCTTTCAATTCAGAATGCGCAGGGTTTCTCTAAGGGCGA
ACGGCATTATTTGTTCTTCTTTTATAATTAAGGTTTTGCCTCTTCCATTGATTTTAACCCTATCATTCGTTACACAAATGAATATCTTATCTTCACTCAA
AAATTATTTGAAGCAAATTAATTCATCCATTACACTTTTTTCAACATGCGAACAACCTCCACAATTATATACTTACATTTAGCCTCTAGTTTTCTAGGCT
CCCAACCC
>LE_HBa0196I06_SP6_302842 (trimmed for quality and cloning vector)
AAGAAGTGCCTAGGTGATCCATCATCAATTCTACTGGCAGAAAGATTGGGGGTCGATGAAGACTTGCCCTATGATGAGGTACCTGTTGAGATCTTTGACA
GACAGGTCAAGCAGCTGAGAAACAAAAAGATTGCCACTGTAAAGGTATTATGGAGTAATCATTTTATTGAGGGTTCTGCGTGGGAGGTCGAGGCCGATAT
GAGATCCCTCTATTCCCATCTTTTCAATCCTTGAGGTTAGATTCCATACTCTTATGTCGAAGTGTCCTTATCTATCCATTCTTTGTTGCTACTGCTTGAC
TGTGCAAAGTGGTTATGTTATGATATGACTGGTGTTATGATAGATTATAAGAAGTGTCATTCGGGGACGAATGTTCAAAAGGGGGGGGGGGATAATGTAA
CAACCATAAAAAAGGATATGATAAGTAATGCTTAATGTGTCTAGAATTCCTATGATTAGATCGGGTTCACACAAAATTGATGCGCGTAGAACCAGACCTC
TGAACC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.966282
Expected error %
0.049827
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 97 E Value 2e-19 Identity 18.10% Align. Length 236bp (46.64%) Frame 2
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38792.1| Score 94 E Value 2e-18 Identity 17.30% Align. Length 236bp (46.64%) Frame 2
putative gag-pol polyprotein [Solanum demissum] gb|AAT38791.1| putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0196I06
Clone
Clone name
hba-196i6
LE_HBa0196I06
P196I06
Clone type
BAC
Contamination
none
Estimated length
90,562
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found