Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0099L08_SP6_31646

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0099L08_SP6_31646
Primer
SP6
ID from Seq. Facility
LE_HBa_099_L08-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
4 trimmed for vector and quality, 885 raw
Sequence
>LE_HBa0099L08_SP6_31646 (raw untrimmed)
AGAGAGTAAAGTGTAGAGATGGGAAGTTGGAGGGTGAGAGAGGATTGGTGAGATGTTGGAGTAGGGTGGAAGAAGATGGTACCTTGTGGAGAATTTATAA
TAGAAATTAAAGAGAATATATGTGTTTTTGTGAATTTATTATATTTGTATTTGTTTTATATATTTGTTTTATATTTATATATTATATGGTATATGAAATA
ATAAGATAAAATAAACTAGTTAATTTAAATGGAAGTAAGAATAAGAACGATAATGATTGATAAGTAAGAGAAGTATATGGATGAGGACGGATGTGTTCAT
ATTGTATTTATTTTGGGAGGTGCGGTTGGTAATATTAGAGTATATGAAGATAAGTTAATATTTATGTTTTTTATTTATTTTGTGTTGGATGTTGATTATT
TTTTTTTTATTTTTATGTGTTTTTTTTTGTTTTTTTATTGTGATTTTTGTTTTTTTTTCGTTTTTGTTATTTGTTATTTTTATTTTTTATTGTTTGTTTT
TGTTATTTGTTTTTTTTGAGAGAAAGAGAAGGATAAAGATAGTGGGAGAGTGTAAGATGAAGGGTGAGATCTTGGTTAATCGATTAATTTGGTTAGTTGA
TCATGATTGAGTAATATGATGTTTATTAGATTAGGATTGATGGACGAATAATGTGTAAAAATGGCTTCGGNNNNTTAGAGGATGTGATATGATGAGTATT
TAGTTTAGATGGGTGGTTAGAGAATAGGGGGGAGAAGAGAAGCAAGTATTGGAGAATAAGTAGGTGATATATTATTGTAAATTTAGGGAAATTGTAAAGT
TAAGAGTAGGTAAAAGATGTGATATGAAATAGGGGGGGTGTGTGAGAGTATNCTAGTTAATGGAGTGAGAGGGGTGGTGTGTTTT
>LE_HBa0099L08_SP6_31646 (trimmed for quality and cloning vector)
TAAA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.551715
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0099L08
Clone
Clone name
hba-99l8
LE_HBa0099L08
C12HBa0099L08
P099L08
Clone type
BAC
Contamination
none
Estimated length
64,856
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found