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Clone Read LE_HBa0103A08_SP6_32654

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0103A08_SP6_32654
Primer
SP6
ID from Seq. Facility
LE_HBa_103_A08-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
41 trimmed for vector and quality, 785 raw
Sequence
>LE_HBa0103A08_SP6_32654 (raw untrimmed)
GGGAAATATTTTTTGTGTAATTAATTTCTATACGTTGACTATATCTTATTATTTTCAAGTTTTAATTCCTCAGTGCTATAAAGGCCCCAACANNNANNAC
GNCNGCAGGNNCGAAACCTTTAAGAGCACCACGNNCACGGGGAGGCAGACNACAACAGACAGAGAACAGGGCAGAGGGAAACGCACACAAGCGCCGACAG
GAGCACAGAAAGGCAGGAACCGAAGGGCCGACCACGCAGGCGCAAGACGAGACAGCGAGGGGGGGCCCGAAGCGAGCCCCAAGCCCGCACGANCCGAAGA
CCGAGACACAGGAGAGCGAAAGGCCAACCCACCACAGACGCCGAACGGGAAGAAGGAGGCACAACACAAACAAGAAACCGAGGAGGGAGGAGGGGACCGG
GAAACGGAGGAGACAGAGCCGCCGGCCACAAAAGCACGAGAGGCAAAAAAAGCGAACCCAAGAAGCACAAAAAACCAAGAAACAGAAAAGACGAAGGCAA
GGCGGCAAGAGAGGGGCCGCGAGAGGAAAGACACGGAACACACCGAAACACGACAAACGAGAAAAAACACCAAACCGGAAAGAGACCAGGCACGGGGGAG
GAAAGAAGGAGCCGAAAGACGGGCGAAGAGAGGACAACGGAAGGCCGGACAAGCAGCGAAAGGAAAGGCACCAAGGAGGAGAAAAAAGAGGGCGGAGACA
GGGGAAAGGCAGCCCCGCGAGAAGACCACCCAGACGCCGCCAAACACGAGCGAGGGAGGGGGGGGGAGGGAGGGAAGGGGAGAGG
>LE_HBa0103A08_SP6_32654 (trimmed for quality and cloning vector)
TATACGTTGACTATATCTTATTATTTTCAAGTTTTAATTCC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.730482
Expected error %
0.307748
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0103A08
Clone
Clone name
hba-103a8
LE_HBa0103A08
C03HBa0103A08
P103A08
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found