Clone Read LE_HBa0008E13_T7_3289

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0008E13_T7_3289
Primer
T7
ID from Seq. Facility
LE_HBa_008_E13-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
742 trimmed for vector and quality, 1001 raw
Genbank Accession
DU023410
Sequence
>LE_HBa0008E13_T7_3289 (raw untrimmed)
CCAAGCTGGGTCCCCGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCTAGACGCCCACTGGCTAGAGAGGTTCAGACTCTAGCTAACGACTTG
ATGAGATTAGAAGTAAATGAGAAGGGAGGATTGTTGGCTAGTGTGGAGTCAAGATCTTCTTTTCTTGACAAAATTAAGGGAAAACAGTTTGATGATGAGA
AACTAAGGCAAATCCGAGATAAAGTATTGCGAGGGGAGGCTAAGGAAGCACAAATCGATGAGGAAGGTGTTTTGAGAATCAAGGGAAGGGTATGTGTACC
CCGCGTCAATGATTTGATCAACACTATTCTGACAGAGGCTCATAGTTCAAGGTATTCTATACATCCGGGTGTAACCAAGATGTATCGTGACCTAAAACAA
CACTTTTGGTGGAGTAGAATGAAGCGTGACATTGTGGATTTTATTTCCAAATGTCCAAACTGTCAACAAGTAAAGTATGAACACCAACGGCCCGGAGGAA
CACTTCAGAGAATGCCCATTCCGGAATGGAAGTGGGAAAGGATTGCAATGGATTTTGTGGTTGGTCTTCCAAAGACAATGGGTAAGTATGACTCTATTTG
GGTGATTGTTGATAGGTTAACTAAGTCTGCTCATTTCATTCCGGTCAAGGTGACTTACAATGCAGAGAAGTTAGCCAAAATCTATGTATCAAAAATTGTT
CGGTTGCATGGGGTTCCACTCTCCATCATATCAGATAGAGGTACGCAGTTTACTTCTAAGTTTTGGAAACATTGCATGCGGAATTGGGTACTAGGTTGGA
CCCTTATACCCCGTTCCATCTCAGACCAAGGTCATTCTGACCAACGATTCAGTGTTGGAGAAATGCTTCTGCCTGGTGTAAAAATTTGGGGGCATTGGGA
AACTTCCACCCTTACCGGATTTTTATACAAAATAGCTTCCCTCAGATTGATTGGGTCCTTCCAAATTTTAGGAGGAAAATTTGGTCCCCATTGTTGTTTA
A
>LE_HBa0008E13_T7_3289 (trimmed for quality and cloning vector)
AGCTTCTAGACGCCCACTGGCTAGAGAGGTTCAGACTCTAGCTAACGACTTGATGAGATTAGAAGTAAATGAGAAGGGAGGATTGTTGGCTAGTGTGGAG
TCAAGATCTTCTTTTCTTGACAAAATTAAGGGAAAACAGTTTGATGATGAGAAACTAAGGCAAATCCGAGATAAAGTATTGCGAGGGGAGGCTAAGGAAG
CACAAATCGATGAGGAAGGTGTTTTGAGAATCAAGGGAAGGGTATGTGTACCCCGCGTCAATGATTTGATCAACACTATTCTGACAGAGGCTCATAGTTC
AAGGTATTCTATACATCCGGGTGTAACCAAGATGTATCGTGACCTAAAACAACACTTTTGGTGGAGTAGAATGAAGCGTGACATTGTGGATTTTATTTCC
AAATGTCCAAACTGTCAACAAGTAAAGTATGAACACCAACGGCCCGGAGGAACACTTCAGAGAATGCCCATTCCGGAATGGAAGTGGGAAAGGATTGCAA
TGGATTTTGTGGTTGGTCTTCCAAAGACAATGGGTAAGTATGACTCTATTTGGGTGATTGTTGATAGGTTAACTAAGTCTGCTCATTTCATTCCGGTCAA
GGTGACTTACAATGCAGAGAAGTTAGCCAAAATCTATGTATCAAAAATTGTTCGGTTGCATGGGGTTCCACTCTCCATCATATCAGATAGAGGTACGCAG
TTTACTTCTAAGTTTTGGAAACATTGCATGCGGAATTGGGTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.968767
Expected error %
0.664034
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 330 E Value 3e-89 Identity 21.10% Align. Length 710bp (95.69%) Frame 3
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 328 E Value 9e-89 Identity 21.00% Align. Length 710bp (95.69%) Frame 3
putative polyprotein, 3'-partial [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0008E13
Clone
Clone name
hba-8e13
LE_HBa0008E13
P008E13
Clone type
BAC
Contamination
none
Estimated length
121,076
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found