Clone Read LE_HBa0112F12_SP6_36742

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0112F12_SP6_36742
Primer
SP6
ID from Seq. Facility
LE_HBa_112_F12-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
7 trimmed for vector and quality, 931 raw
Sequence
>LE_HBa0112F12_SP6_36742 (raw untrimmed)
CGAGTTTTTTTGTTCTTCTGTTCGATTGTAGCTGGAACTTTCGTTCGAGGAGACTGCGTTTCCTTGACAATCTTGGATGGTTAGGCATTCCATGACCACG
TAAGACGAAATACACCCGACACAAACTTACTAATCCTTTTCCTTGGATCACAACCATAGTTGGAGCTTATATAAGAGCAATTGTGTAAATTTCAAAGCAT
ACTCTGTCCTACTCCTATCTCCTTGCGCAAATGTATAATGAACTCGATGTACTTTTGCCTATGTCATCTCAAGAGCAAAAAAACCTATCTAGGAGAAGCA
TCATTAGAATTTCGCCCAATCTAGAGGTTCTTCGATCTACCACATCGTCTCTTCCATCCATTGGTTGAACCAAATTTGAACAACACCCCCTTAGATAAGA
GGCGCAAGTCCTTCTTGTTCTACAGGCTTCACTACCATGATCCTCAACATCGTATACACCTCATCAATGAACTCCATAG
AATATTCTTCATTGTTAGACC
CGTGAAATTCCCAAGGATTCATTCTAATAAACTCCGCCATCCTTGTTGCCGTTGTACGCATACTAGGGTCACAGGATCCACAACCTCTCTATTTGCTCCA
GACATCGTAGTTTGGGATAATGCTTTAGATGCAGATCAAAGAATCATCATTTTTCACTTGCTCGACCAGAGGGTTGACCGACGCTCGGGGAACCTCGTGT
GTTACATTTTCGCAAACATGTCTATTTCTTCTCATGGGATTCCTTCTGGCGAGGCATGGTATTAAAAACATAAATGGGGGTTAGGAAATAAAGACCCCTA
TAGGCACTCTCCTTGTAAAACTTTGAAAGAAGAAAGAAATGAATTTTCTCAACTTCAATAGCATCTTATCCAATTTGGGGCATGTTTCCATTCCGTACAA
AAATCAATCTTACGAGATTTAACAATACCGA
>LE_HBa0112F12_SP6_36742 (trimmed for quality and cloning vector)
AATATTC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.302137
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0112F12
Clone
Clone name
hba-112f12
LE_HBa0112F12
P112F12
Clone type
BAC
Contamination
none
Estimated length
124,266
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found