Clone Read LE_HBa0112F12_T7_36743

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0112F12_T7_36743
Primer
T7
ID from Seq. Facility
LE_HBa_112_F12-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
317 trimmed for vector and quality, 897 raw
Sequence
>LE_HBa0112F12_T7_36743 (raw untrimmed)
AGGTTAGCTGGGTCCGGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTACCTTCTTGAGGTGGTATGACTTAGAGGAATTTCGATATCCATTA
TTTCAAATATAGGTGCAAGATTACGACGCAATTCTTGATATCCTTTAATAAAGGTTTGGGATCAAAGGTGCTTTTGGGCTCTATTTTTCTTCCCCAGATA
GATGGAAAAGAATAGGGTTCTACCAAGAGTTTATAAGATATGTTTCAAGCTTGTGTGATTATCTTCATGGGAAATTGGGATGATCGCCTCCTCCTCATTG
TGCTTGGCTGCATCAAATGTTATCTTTCCGGCGCCCCATTACTCCCATCTGAAGCTCTTTATGGGACTACATGTTTTGAATCTCGCTTAGATTGGTTGCT
AGAATCTTATTTGCTTCATCCAGCAATGGAATACGGTACTTGGCTCCAGAAAGGTTCGACGATGTAGCGAGTCGCCAAATAGTCCTCCACATCTTTTAGG
GGATGGACGTAGTAGTTTGACGCGTATTCCTGGGTTTCTCACATGGACTTCCTACGCAAGCTGGTGTCCGGCATTGAATTAAGAGTGAGCGTAATCTCCG
TTTAATTAGACTATAACTTAGTTACAAAGAGGGTGGGATTGTTCGTTTTTGAGCTTTGAACTCCCCACTTTACTTTGGGGAACTTTGTGTGGGGTCCAAT
TCCTGTATTCTCCTATAAGCTTCGGGGACCTCCCTCGGGGGTCCATCACTAAAGTGTTTTATTTTAGGGGAAACAAAATCACTGATCATGTTTCCTGTTC
GGCTGCGACTCGGCCAGTGGGAAGGGGAAGCGTATGTAAGTGCGATACCCAATACATTCACAAAGAAACCCATGGCCTCATATTAAGTTCATGAGTT
>LE_HBa0112F12_T7_36743 (trimmed for quality and cloning vector)
AGCTTTACCTTCTTGAGGTGGTATGACTTAGAGGAATTTCGATATCCATTATTTCAAATATAGGTGCAAGATTACGACGCAATTCTTGATATCCTTTAAT
AAAGGTTTGGGATCAAAGGTGCTTTTGGGCTCTATTTTTCTTCCCCAGATAGATGGAAAAGAATAGGGTTCTACCAAGAGTTTATAAGATATGTTTCAAG
CTTGTGTGATTATCTTCATGGGAAATTGGGATGATCGCCTCCTCCTCATTGTGCTTGGCTGCATCAAATGTTATCTTTCCGGCGCCCCATTACTCCCATC
TGAAGCTCTTTATGGGA

This is probably not a useful sequence.

Problems:
  • High predicted error rate
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.956856
Expected error %
4.05502
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39297.1| Score 77 E Value 2e-13 Identity 16.90% Align. Length 248bp (78.23%) Frame 3
putative gag-pol protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 75 E Value 6e-13 Identity 16.50% Align. Length 248bp (78.23%) Frame 3
putative retrotransposon protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0112F12
Clone
Clone name
hba-112f12
LE_HBa0112F12
P112F12
Clone type
BAC
Contamination
none
Estimated length
124,266
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found