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Clone Read LE_HBa0211D01_SP6_372612

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0211D01_SP6_372612
Primer
SP6
ID from Seq. Facility
LE_HBa_211_D01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
11 trimmed for vector and quality, 836 raw
Sequence
>LE_HBa0211D01_SP6_372612 (raw untrimmed)
AGCCCTTTAGTGGATAATGATGGAATGAGAGAAGTGACAACGACGCTTAAAATTTGCTCCAGACACTATGACAATTTAACTTTCTGCTTAGTGGTTAACT
GGTTCATAATTCCAACTGGGGGAGGAAATAATATATTTTCATACATGAGGACACAAAACCAATGATTAATAATTGTCCAGCCAGAATGTGCCTTTTTTCA
GTAAGATATTGCTCCCTACTATACCTATTAGTATAAACACCCATTGTGTGTGGAGTCCTTTCGTAGATTTCCCGGTTCGTTTCTTCTTTTCCAAAACGTG
TGATAAAGTGAATATAAACCTGCGTACTGGAAAAATGTCTTCCTCAATGTCACGCGGCCATAGAGAATACTCCTGCTGTACAGCAGTGATAAGAAGAACT
GCATGTGCTCTCCTTCACGTCACCGGGTGAGCTTCAGACAGGCCAATATCCTTTAGATAACCTTCTTCGAACATTATTAGAGTGCTTACATCATGTGATT
CACTCACCACAATAAGTACTATATACAGATAGAGCAGCTTCACGGGAGAACTATAATCTAGAATCTCGATTAGCAATGCATGCATTCCTACTCATAGCCA
ATGCATATTATGTGCGGCAAGGCACCTAAATTGAACCTTCTCTAGGCCGATCGCTTACTGTTCCCCCAAAGGGCACTATTGAGTCTACCCGGGGCCATAG
CACAAATCAATGACTCCCACCTCGTCGCGTTCTAAACTAACTGCACATCGTACAAAACACTTCCTGAGTCCCCTTAACGGTACCTAAATTGTCCAATCTT
ATACCAACCAACCTGGTCCCCGCTGAAATGATTACG
>LE_HBa0211D01_SP6_372612 (trimmed for quality and cloning vector)
AATGATTAATA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
  • Not screened for contaminants
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.375619
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0211D01
Clone
Clone name
hba-211d1
LE_HBa0211D01
P211D01
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found