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Clone Read LE_HBa0113D16_SP6_37422

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0113D16_SP6_37422
Primer
SP6
ID from Seq. Facility
LE_HBa_113_D16-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
163 trimmed for vector and quality, 715 raw
Sequence
>LE_HBa0113D16_SP6_37422 (raw untrimmed)
TTCGCTCAATAACCTTCTCTCTTATCTTTCTTCATAGGCCCCATCAGGCTTAATGCTCTATTTCTACCGGAAGAGTGACAAGTTTTACCATATACAATTT
GCTATGGGGACATTCCTATGGGAGTCTTATACGCAGTTCGGAAGGCCCAACGAGCATCATCAAGCCTCCTTGACCGCTCCGTTCAACTAGCGTTCACTGT
TTTTGACAATATCTGTTTGATCTCCCTATTTGACACTTTAACTTGCCCATTAGTTTGAGGATGGTAAGGAGTGGCCACATTATGGAGAAACCCATATTTC
TCTAATAATCCCTTGAACTATTTGTTGCAAACGTGGGATCCCCCAACACTAACAATTGTTTTGGGGGTACCTAATCTAGAGACTATATCCTCTTTCAACA
ACTCAGCGACACTCTTCCCTTCATTGGTTGCTATGGAGATATCTTTACCCATTTATATACTTTATCTACCGCATATTAAAATTCTTTCTTCCTTCCTGTT
GACGTAACATAAGTTCTCTTATGCGTCTATTTCCGTAACTTCAAATTCTTCTTTTATAGTATTGGAATAATACATTTATTATCTTGCTTTTTTTACTTGT
TTCCCCCTCCATTTTGTTTACTTCTCATTCATTCATGTTATTATCTTCATTCCTGTTCAATATGTTTCTGATTTATTCCTTTGTTTATAGTATTTGTATG
TCTTTTATATATTTC
>LE_HBa0113D16_SP6_37422 (trimmed for quality and cloning vector)
GGCCCAACGAGCATCATCAAGCCTCCTTGACCGCTCCGTTCAACTAGCGTTCACTGTTTTTGACAATATCTGTTTGATCTCCCTATTTGACACTTTAACT
TGCCCATTAGTTTGAGGATGGTAAGGAGTGGCCACATTATGGAGAAACCCATATTTCTCTAAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.955764
Expected error %
1.80401
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD23707.1| Score 73 E Value 3e-12 Identity 21.00% Align. Length 161bp (98.77%) Frame 2
putative retroelement pol polyprotein [Arabidopsis thaliana] pir||G84476 probable retroelement pol polyprotein [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAQ82031.1| Score 72 E Value 6e-12 Identity 21.60% Align. Length 161bp (98.77%) Frame 2
pol [Pisum sativum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0113D16
Clone
Clone name
hba-113d16
LE_HBa0113D16
C03HBa0113D16
P113D16
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found