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Clone Read LE_HBa0229A18_T7_388565

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0229A18_T7_388565
Primer
T7
ID from Seq. Facility
LE_HBa_229_A18-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
59 trimmed for vector and quality, 1009 raw
Sequence
>LE_HBa0229A18_T7_388565 (raw untrimmed)
NNNGGAGAATGACGGGGATCTCAGAGTCACCTGCAGGCATGCAAGCTTAGATATTGCCTCTACGTCAGGATCTATAAATTTCTCACTCTCCGGGTTCTGG
CAAATTTTTTGAATCAAACCCTCTATTCTTTGACCCAAGTTAACATATAAATAAGTGTGAAAGATGGCCATATTTCCCCACGAATTAACATAGGGTTACC
TCTTTTAACCCCTAAGAATTAGAGATTATTATTATTAACCCACGAATAGCTAT
AATTAATGAAGGAATAATCCATAAACGTCCCTTAAAACACGTAAGGA
AATCCGATTCTGCCTGGGATTTGTGCAACCTGTGACGAGCCGTCGTGCCTGCAACGGACCGTCCTGCAGGACATCGAAAGAGTCAGAGAATCAATTTCCA
CTGAACTATCTATGTACGGGCCGTCACGCCTGTGTACGATCCGTCCTGACTACCGTGACGAAGTTCAGAGAGTCTATTTTCAGTACCCAAATTCAGATGT
TCTAAGAGTATTGAAATGAAACCCGTACAATGGTCCGTCATGCTAATGACGGATCGTTAATTACGACCGTTGCCTCTGCCTGTTTTAAGAGAATTGAAGT
TTGTTGCTCATAACGACTAATCAGGTCATTATGAAATATACCAAGCTTCCTATCTTTCGTTCTCGAACGATCAACATAAAGGAAAGAGGGGCTCCAACGA
ATTACTTGATATTGGTATACAAAAGGGGGAATTTTCTCTACGATACCCAGCATCTTATTTTCGAGGGTCTTCATAAAAAGTTCTGATCCTTCCATTGGAA
TTTTTCTCGGAATGAAATCCCTACTTTATCTGCAAGTTGGCGAAATTTTTCTATTTAAATATAATAACAAGCTCCCCCCTTTTTAAAAAAAATTTTTGGT
ATATATGAAATACTTTAATTCCCAAATGAAAAAAAAAAATTTTCCTACCCCCCATTGGAAATTTTTTTAAATTTGTTAACATGGGGAAACTTTGGAAGTA
TTTTTGTTA
>LE_HBa0229A18_T7_388565 (trimmed for quality and cloning vector)
AATTAATGAAGGAATAATCCATAAACGTCCCTTAAAACACGTAAGGAAATCCGATTCTG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for contaminants
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.798421
Expected error %
2.05517
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0229A18
Clone
Clone name
hba-229a18
LE_HBa0229A18
C08HBa0229A18
P229A18
Clone type
BAC
Contamination
none
Estimated length
81,449
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found