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Clone Read LE_HBa0229F06_T7_389003

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0229F06_T7_389003
Primer
T7
ID from Seq. Facility
LE_HBa_229_F06-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
31 trimmed for vector and quality, 993 raw
Sequence
>LE_HBa0229F06_T7_389003 (raw untrimmed)
CTATAGTGCTCCACGGAGCCACTGTGAGGGATGTCTGCTGAATTCGCCCTTTGGTTACCTTGTTTCGACTTCTCCCCAGTCACGAATCCTACCGTGGATA
AGCGCCCTCCGTTGCGGTTAAGCTACCTACTTCTGGTAAAACCCGCCCCCTTGGTGTGACGGGCGGTGTGTACAAC
ACCCGGGAACTTATTCACCGCGAC
ATGCTGATCCGCGATTACTAGCGATTCCAACTTCATGGAGTCTAGTTGCAAACTCCTATCCGGACTACAATACACTTTCTGGGATTAGCTCCCCCTCACG
GGTAGGCGGCCCTCTGTATGTTACCATTGTGGGAACGTGTGAAGCCCTACCCGAAACGGCCATGATGACGTGACGGCATCGCCTCCTTCCTCCGGGTTGT
CATCAGGAGTTTCCTTACAGTGCCCCTTCACAACAACGAAAGTCACGGGATGGGCTAGATGCGTCACTTGACCGCATGTCTCTCTACCCAAGCTGCTCAC
TGCCGAGCCGTCCTGTGTGCAGGTCCATTCTCAAGCATTCCATTATCTCTTCCGGATTGTAGTCTTGCCACGGCTCAACGAGGTCATACCCGTTCCATCA
AGGTAACCCACTTCATCTCCCCATGTGAGGGGTACCCGACAATTTCATTAAGTATACTCTCTAGAGCGTATTCAACAAGGATGAAGTTATCACTTTTTAA
GAACCCTTACAGTCCTGTTATAATTTGGAACCCTTCACATTTGGGATTGGGCGTGTGCTTACTGTGGTTTTTGAATCCAGCTTGCCCCCCTCCCAAGGGT
GTTTGGGCCCCAAATGTTTTTTGGGTGGACTCAAAATCTCTCTCAAAATTCCAATATGTGGTATGCCCACTTCCGGGAGTCCTTTTCGCAACGCCCCTGG
CAATTTTTTTTTTCTATGCGGGGTTTGAAAAAAAATAGGGATTTCTAAAGTTTGTTGTCCGCGGGAATAATAATTTTCTTTCATCCTCAAATG
>LE_HBa0229F06_T7_389003 (trimmed for quality and cloning vector)
ACCCGGGAACTTATTCACCGCGACATGCTGA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
  • Not screened for contaminants
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.71228
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0229F06
Clone
Clone name
hba-229f6
LE_HBa0229F06
P229F06
Clone type
BAC
Contamination
none
Estimated length
104,559
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found