Notice: If you try to use Google Chrome to access the SGN FTP site, please check this link to resolve connection issues.

Clone Read LE_HBa0229N08_SP6_389756

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0229N08_SP6_389756
Primer
SP6
ID from Seq. Facility
LE_HBa_229_N08-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1143 raw
Sequence
>LE_HBa0229N08_SP6_389756 (raw untrimmed)
NNNCCGATTGAGTTTNTTNTTATGCCAAAAAAAANCNNTAATAAAATTAACTTAACTCTCTGANCGAGGCAACCTTTTTACAGGGCTTCCTCGAACTTTC
TGGGGTAACGTGTCCCTCTACACAGCTGATTTCGGCACGCGGCCTCTAAACATAGACGTTATAACTGGACAATTATTGCGAGCGTTGTGCAAATATCCCT
ATCATGACACACCATGTAGATCCCGCTATTCCCGGTAGTATGGCGGAGGACAAACTCTAATAGTTGCCTATAATGTGGACACCTCAATCAACACCTCTTA
TAACTCTTCT
TCATAAGATCTCATTGAAACTACAAGAGATGTTTAATACTTTCAATTGTCAACAACCACGGACTCCTTACACTCCTATCCTTGCATCGTG
AGATGATGCTTTGCATGACGTTAAGAATATCTTGACAATCCTTCAGGATTTCTCTTAGAAGGTCATCAAGTTGTGAGATATATAATAGCTTAGTTCACTG
ATTGATCCCGATCTGCCACACCTGGCATTGTCCAATAGATGCAATATTTGATGAAGCAACCACTCGTGTCACTTTCTATGTAAGTGTCACTTATTGACAC
CTAAAAGTCAACATAGTATTTAATCTAGATTCAAGTTCCATTTATTTACCAGTGCCCTTCCAACTGCTTCTTTCTGACTCTCTCAAGCCTCAACTTTGCA
TCTACTCTTCTGTCCGAAAATTCTATTAACTCTACAATATTTCTCAAGTATAAGATGATTCTCTATTTTCAATTTCCTTATTTTCATCGTAATTTGTGCA
TAGGATCCTTCTCCGACCTTTCTAATTGCAAATTCCTTTCCTTTACTCTCATTTTCTCTCACTTAGTTCCGAATTCTTTCTGAGCCTTTTATCTCTTTAA
TTCTCTTCCTATTTATTTTTCTGACCAATCTCCTCCTTAAAGATTCATCGTCTCTCCTTCTCTATAATCTCTCCACATCCTTATCTTACCCCTTTCTGTG
TCACTTTCCTTCCTCTGCTCCTGCTTTCTCTTTCACATTCTCTCTACTCTTTTTTAAACTCGCACGTTAAATCCTCTAACTTTTTCCCATTTCATCCCTT
TTATATTAATGTTTATTTTCCTTTCTAGACTTTTTCATTTCTG
>LE_HBa0229N08_SP6_389756 (trimmed for quality and cloning vector)
TCA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for contaminants
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.493504
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0229N08
Clone
Clone name
hba-229n8
LE_HBa0229N08
C07HBa0229N08
P229N08
Clone type
BAC
Contamination
none
Estimated length
124,233
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found