Clone Read LE_HBa0223D16_SP6_400292

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0223D16_SP6_400292
Primer
SP6
ID from Seq. Facility
LE_HBa_223_D16-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1400 raw
Sequence
>LE_HBa0223D16_SP6_400292 (raw untrimmed)
NCCACCCTACCTCANATNTTCACCCCGCCCCCCACAAACGNAANNNNNNNNANNAANNCANAAAGCCACCCCGAAAGAAAGGAAAACCGACCCGTTGAAA
GAGAGACCAGANAAAAAAAAGAAAAACGAGGAAACCAACCACACCCCTCTTTAATAGGCACCGCACAAGACACGGGGGGAGGACCACACCAAACAAGCAC
AACCCCAGAAGCGACACCTAGTATATCTGTCTACGCAAACTTATATTTAAACACAGCATTAACTAATTTTTGCAGAAAACAACTGGCATCAACACACACT
TACTCAACCTTAACTTTCATTTGTCTGCATACATCCCGAGACAGTACAAAATGACAACATACCCTTCAACTTCTTTTGTACAGCAACACGTCTACGATTT
CTATTCTATCTCACAAACCCAATTGGCATTCCTATCTCTACGCAACACATTATATACACACGATACCAAAGCTATGTTTCCTCACAAACGAGCGCGCACT
TGAATATAATGTTTGGGTAAACAGAAACTAATGTAGATCCCTATCCACATACTACCCTACCTAATCATCTACAACACTTTCTTCTAAACAATCTCTCATA
TATCGCTGACCACTTAACCTACTCGAGTTACATGCCATACAACTCTGATCAAAACACCACACTCTTTCCTAAATAGATTTCCTATACACTTCCACACCAA
TTGAACCCCCATTCTATTACGTGCTTTTAAGCGCCTCACTACATACTCTAATACCTTATTCATCCTTCATTATTAATGATTTCTACTCACCCCATTATCT
ATCAACCTAACATTTCTCANCTCAGTCATGATACTATTCATTTCATCCAAATGGCTATAAATATTTCTAGACTCACAATAATCATACACTCCGCACACTC
CTTACATACCCATCCATAATTCTACCCCATCGCCTATAACATAAACCCCATCGCATACTTAATATCTCTGCCAATCTTCTTCTATAGCACATCCACTTTC
GTTCCACCCTCATCTTACCTCCACATACTTATTCATACTACAATCCCTATTATAGATCACACCCTCTTTTCTATCTCTCTCAACCTACCATCTCCTTCTA
CAATAATCTATCCCAATCTATCTCATAATTACAACTCACTCCAATGATACTCTCACTCCTCTCACAACTATCTCATTTTCAAGACACTCCACACTTTCCC
TAACCACTAATAACCTATAACTCCCCGACCCCTTCTTTCACATTCCTTAACACTTAATTCATTTACTACCTTACAATCTCTCTCATCTCTAACACTAATC
TACTCAATATATCTTCACCTGAATTTATCTATCCATTCCTCCACATCACTAACCTCCCTCCATTCTATCACTACCTCCTCTTCATCTCTATAGTGTCTAC
>LE_HBa0223D16_SP6_400292 (trimmed for quality and cloning vector)
N

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for contaminants
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0223D16
Clone
Clone name
hba-223d16
LE_HBa0223D16
P223D16
Clone type
BAC
Contamination
none
Estimated length
88,826
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found