Clone Read LE_HBa0117M03_SP6_40132

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0117M03_SP6_40132
Primer
SP6
ID from Seq. Facility
LE_HBa_117_M03-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
727 trimmed for vector and quality, 910 raw
Genbank Accession
DU060394
Sequence
>LE_HBa0117M03_SP6_40132 (raw untrimmed)
CCGGGGTTAGGCTCCAATCCATATCATGGGATCCAATGGTATTACTGTTGGCAACGGTGAGTCACTTAATATTTCTCATACTGGCACGGGTACCATTAAA
ACCCCCCACCGCTATCTTTTACCTAGGTAACCTTACCCACGTCCCTTCTATTAAAACCAATCTCCTTTCAGTTCACCAATTCACAAAAGACAATAATTGC
TCACTCTTGTTCACCTCTAATGATTTTCAGATCCTAGACAATACTACCAAGAGGGTGATTTTTCATGGCCCCTGTGAGCATGGTCTGTACGTTCTTCCTG
GCATAAGTTCTTCTGCCCACCCAGTTTTAAAAAGCGTTCCTGTGGCTCCGGTGGCTCTTTCGGCTGATGGCCATAGTCTGTTGTGGCACAGTCGTCTGGG
TCACTCGTCTACTCAAATAATAAATTCTTTAATGTCTCAATTAGGTTTTTCTTCCATTCATGTAAACAATTGTGACTCCTGTTCAATTGCTAAATCTCAT
AAATTACCTTTTACTTTATCTGAGAAGCGTACAACTGCACCTTTTCAACTTATTCATTCTGACCTATGGGGTCCTATTGCTGTTCCTTCATTTGTTGGTT
TTCGCTATTATATTTGTTTTGTGGATGATTTTACAAAATACACTTGGTTGTACCCACTAAAACACAAATCACAGGCATACACCACCTTAGTCACTTTTGA
AAAAATGGTCAAAACACAATTCAATTCTCATGTTAAACTTTTTTCAAAGTGACAATGAAAAGGATATGTAAAATACATCTTTGGCCAGTTTCTGCAATCC
CTGGGGATTATACATTAAACCTCCTGTCCGTACACTCCCGAAACGAATGGGGGGGCGGAACTAAAGCATCGTCATCCCATTGAAACGGGGTTACCCTTCT
ACATCAACTC
>LE_HBa0117M03_SP6_40132 (trimmed for quality and cloning vector)
TGGTATTACTGTTGGCAACGGTGAGTCACTTAATATTTCTCATACTGGCACGGGTACCATTAAAACCCCCCACCGCTATCTTTTACCTAGGTAACCTTAC
CCACGTCCCTTCTATTAAAACCAATCTCCTTTCAGTTCACCAATTCACAAAAGACAATAATTGCTCACTCTTGTTCACCTCTAATGATTTTCAGATCCTA
GACAATACTACCAAGAGGGTGATTTTTCATGGCCCCTGTGAGCATGGTCTGTACGTTCTTCCTGGCATAAGTTCTTCTGCCCACCCAGTTTTAAAAAGCG
TTCCTGTGGCTCCGGTGGCTCTTTCGGCTGATGGCCATAGTCTGTTGTGGCACAGTCGTCTGGGTCACTCGTCTACTCAAATAATAAATTCTTTAATGTC
TCAATTAGGTTTTTCTTCCATTCATGTAAACAATTGTGACTCCTGTTCAATTGCTAAATCTCATAAATTACCTTTTACTTTATCTGAGAAGCGTACAACT
GCACCTTTTCAACTTATTCATTCTGACCTATGGGGTCCTATTGCTGTTCCTTCATTTGTTGGTTTTCGCTATTATATTTGTTTTGTGGATGATTTTACAA
AATACACTTGGTTGTACCCACTAAAACACAAATCACAGGCATACACCACCTTAGTCACTTTTGAAAAAATGGTCAAAACACAATTCAATTCTCATGTTAA
ACTTTTTTCAAAGTGACAATGAAAAGG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.958506
Expected error %
0.190086
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T02087 Score 156 E Value 6e-37 Identity 13.30% Align. Length 623bp (85.69%) Frame 1
gag/pol polyprotein - maize retrotransposon Hopscotch gb|AAA57005.1| copia-like retrotransposon Hopscotch polyprotein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU10682.1| Score 153 E Value 5e-37 Identity 40.20% Align. Length 681bp (93.67%) Frame 3
putative polyprotein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0117M03
Clone
Clone name
hba-117m3
LE_HBa0117M03
P117M03
Clone type
BAC
Contamination
none
Estimated length
86,270
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found