Clone Read LE_HBa0117M03_T7_40133

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0117M03_T7_40133
Primer
T7
ID from Seq. Facility
LE_HBa_117_M03-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
821 trimmed for vector and quality, 873 raw
Genbank Accession
DU060395
Sequence
>LE_HBa0117M03_T7_40133 (raw untrimmed)
AATACCTGGGTCCCGGGGTTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCTCAAGCAAAAGGACATGGTGCACGGCCTTCCTGAGATACATATTGAG
ATGGATACATGTGAAAGTTGTATAATGGGAACGCAACACAGGAAGTTTTTTCTAAAAGGGGTGTCTTGTAGAGCAAGTATATTTTTGGAACTAATTCATA
CCGACATATGTGGACCAATGAAGACTCCATCTTTTGGAAGTCAAAGGTATTTTCTAATCTTCATTGATGATTTCTCAAGAATGACTTGGGTTTATTTCTT
AAAAGAAAAGTCAGAAGCATTTGCTACATTCAAGAAATTTAAAGCCCTTGTTGAGAAGCAAAAAAGTTGCAGCATCAAAACCATTCGCAGTGATCGAGGA
GGTGAGTAAACAAGTCGAGAATTTGAAGAATATTGCAAAAATGAAGGTATTCAGAAGCAACTTACAACAAGGTATACTCCTCAACACAATGGTGTATCTG
AAAGAAGAAATAGAACAATTGTTGAAATGGCCAGAACTATTATGAATGAGAAGGGCTGCCAAAATATTTTTGGGCAGAAGCAGTGCATACAGCAGTTCAC
ATCCTTAACAGGTGTCCAACAAAGGCACTAAAGGAAAAGACACCAGTTGAAGCTTGGAGTGGAATTAAACCTTCTGTAAGTCATTTTAAAATTTTTTTGT
GTATTTTTTATGCTCATGTACCTGCTGAGAAAAGAACAAAATTGGATGAAAAAAGTCAAAAATATGTCTTTCTTGGTTATAGTGATGTGACAAAAGGATA
TAGGCTTCTCGATGTCAAAACTAACAAACTGTTAGTAGAGATGTCATTTTTTATGAAAAACATGGAATTGGGA
>LE_HBa0117M03_T7_40133 (trimmed for quality and cloning vector)
AGCTTCTCAAGCAAAAGGACATGGTGCACGGCCTTCCTGAGATACATATTGAGATGGATACATGTGAAAGTTGTATAATGGGAACGCAACACAGGAAGTT
TTTTCTAAAAGGGGTGTCTTGTAGAGCAAGTATATTTTTGGAACTAATTCATACCGACATATGTGGACCAATGAAGACTCCATCTTTTGGAAGTCAAAGG
TATTTTCTAATCTTCATTGATGATTTCTCAAGAATGACTTGGGTTTATTTCTTAAAAGAAAAGTCAGAAGCATTTGCTACATTCAAGAAATTTAAAGCCC
TTGTTGAGAAGCAAAAAAGTTGCAGCATCAAAACCATTCGCAGTGATCGAGGAGGTGAGTAAACAAGTCGAGAATTTGAAGAATATTGCAAAAATGAAGG
TATTCAGAAGCAACTTACAACAAGGTATACTCCTCAACACAATGGTGTATCTGAAAGAAGAAATAGAACAATTGTTGAAATGGCCAGAACTATTATGAAT
GAGAAGGGCTGCCAAAATATTTTTGGGCAGAAGCAGTGCATACAGCAGTTCACATCCTTAACAGGTGTCCAACAAAGGCACTAAAGGAAAAGACACCAGT
TGAAGCTTGGAGTGGAATTAAACCTTCTGTAAGTCATTTTAAAATTTTTTTGTGTATTTTTTATGCTCATGTACCTGCTGAGAAAAGAACAAAATTGGAT
GAAAAAAGTCAAAAATATGTCTTTCTTGGTTATAGTGATGTGACAAAAGGATATAGGCTTCTCGATGTCAAAACTAACAAACTGTTAGTAGAGATGTCAT
TTTTTATGAAAAACATGGAAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.943798
Expected error %
0.356962
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38758.1| Score 205 E Value 2e-74 Identity 58.00% Align. Length 787bp (95.86%) Frame 1
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAG60117.1| Score 204 E Value 1e-79 Identity 59.50% Align. Length 787bp (95.86%) Frame 1
copia-type polyprotein, putative [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0117M03
Clone
Clone name
hba-117m3
LE_HBa0117M03
P117M03
Clone type
BAC
Contamination
none
Estimated length
86,270
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found