Clone Read LE_HBa0041I22_SP6_43050

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0041I22_SP6_43050
Primer
SP6
ID from Seq. Facility
LE_HBa_041_I22-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
438 trimmed for vector and quality, 845 raw
Genbank Accession
DU059347
Sequence
>LE_HBa0041I22_SP6_43050 (raw untrimmed)
TTTCCCCTCTCGGTTTCCTATGGCATTGACAAAAGCTGGGATCCTCTATAAGAAGAACAAAAAGAATCATAATTATCAGGGATGTAGAATAAGATGAGGA
AGAAAAAGAAAAAAATCAACCACAACCACAGTTTTTTCAATTTCAACAACCTTTTACTCATCATGATCATTTTATGTATGAAGATTTAGATACCATCAAA
CAACAACAAGAACAAGCTCGATCGAAGAAACGTTCGTTTTTTCCTCCTCCTCCTCCTCGTCCTTCTTGCTCGAAGCAAAAAGGTGTAACATCGTCAAAAT
TTGGTTGTGGAGAGATTGTTGAGGTACAAGGTGGTCATATCATAAGGTCCATTGGTCGAAAAGATAGACACAGCAAGGTGTGTACAGCTAAAGGTCCAAG
GGATAGGCGTGTGCGCCTTGCTGCTCATACAGCGATTCAATTTTATGATGTACAAGATCGACTTGGCTATGATAGGCCAAGTAAAGCTGTGGATTGGCTT
ATAAAAAAAGCGAAAGCCTCGATTGATGAGCCTAGCCTGAATTGCCTCCATGGGAAACCAACTACCACTGGTGTTGGATCATGCGCTACAGGATGATATT
GATGTTGGAACTGGCAGTCACAAAATGTTAGGGCCGAACAAAAACGCTCGCCCCAGTAGGCTAAAACGTGATTGTCAATATACAAGCGCAATGGCAGTTT
TATGTCCCACATTCTATTAAATTCCGGATGTGATTTCCTGAAACCATCATAATCATTTTTTCCCCAATGGGGATAGGTATGGGGTCCTAAATGCAACGGC
ACTATTCTTTTCCGTAAATTTTTTCATTATATCTTAATTCTTTAA
>LE_HBa0041I22_SP6_43050 (trimmed for quality and cloning vector)
AAGAAGAACAAAAAGAATCATAATTATCAGGGATGTAGAATAAGATGAGGAAGAAAAAGAAAAAAATCAACCACAACCACAGTTTTTTCAATTTCAACAA
CCTTTTACTCATCATGATCATTTTATGTATGAAGATTTAGATACCATCAAACAACAACAAGAACAAGCTCGATCGAAGAAACGTTCGTTTTTTCCTCCTC
CTCCTCCTCGTCCTTCTTGCTCGAAGCAAAAAGGTGTAACATCGTCAAAATTTGGTTGTGGAGAGATTGTTGAGGTACAAGGTGGTCATATCATAAGGTC
CATTGGTCGAAAAGATAGACACAGCAAGGTGTGTACAGCTAAAGGTCCAAGGGATAGGCGTGTGCGCCTTGCTGCTCATACAGCGATTCAATTTTATGAT
GTACAAGATCGACTTGGCTATGATAGGCCAAGTAAAGC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.962057
Expected error %
0.52346
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g15030.2 Score 124 E Value 2e-29 Identity 31.10% Align. Length 182bp (41.55%) Frame 3
68416.m01902 TCP family transcription factor, putative similar to TCP3 GB:AAC24010 [Arabidopsis thaliana]
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g15030.1 Score 124 E Value 2e-29 Identity 31.10% Align. Length 182bp (41.55%) Frame 3
68416.m01901 TCP family transcription factor, putative similar to TCP3 GB:AAC24010 [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAN31111.1| Score 124 E Value 8e-28 Identity 31.10% Align. Length 182bp (41.55%) Frame 3
At3g15030/K15M2_17 [Arabidopsis thaliana] gb|AAM19816.1| AT3g15030/K15M2_17 [Arabidopsis thaliana] ref|NP_850589.1| TCP family transcription factor, putative [Arabidopsis thaliana] ref|NP_188121.1| TCP family transcription factor, putative [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAA97066.1| Score 124 E Value 8e-28 Identity 31.10% Align. Length 182bp (41.55%) Frame 3
unnamed protein product [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0041I22
Clone
Clone name
hba-41i22
LE_HBa0041I22
C12HBa0041I22
P041I22
Clone type
BAC
Contamination
none
Estimated length
103,533
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found