Clone Read LE_HBa0041I22_T7_43051

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0041I22_T7_43051
Primer
T7
ID from Seq. Facility
LE_HBa_041_I22-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
774 trimmed for vector and quality, 860 raw
Genbank Accession
DU059348
Sequence
>LE_HBa0041I22_T7_43051 (raw untrimmed)
ACTCTCCCGGGTCCCGGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTAAGAATTCTTATATGGATTGAAATAGTCAAAGAAGAAAAGGGTA
CAAAAGAATGACCCTAATTGTCCTTGTATTTTATGAAAAGGTATTGGTAAGACAAAATTTTATTTTGACCTACAGATTGATAATTTGACAAATGAAATAT
TTGTCTATTAGTGTATATACACAAATATGTTTTGATGCGTTTTTATATGGATAAATCACATTTATTGAGTACTCCAATGATTATGAGATCGCTTGAAATA
AATTATGATTCACTTTGATCTCAAGAGAAGGATGAAGAGTTTCTTGGTGATGAAACTCCATATCTTAGTGCAATCAGGGTACTAATGCATTTTGCTTTAA
CAATACTCGACCAGATACTTGTTTTGCAGTAAATTTACTGGTAACATTCGATTCCTCCCAACAAAAGGACATTGAAATGGTGTTATGTATATACTTGAAT
ATCTTTGAAGGACCATAGACATGAGTTCATTCTATTTCGAAGAATTCAAATCAAGAGCTGATTGTTACGCAGATGCATAACATTTATCTGATCCGCATAA
AACACCGACCTCAAACACGCTATTTATTTGCATATGGAGGTACAATAATATCCTGACGATCAATGAAGCAAATGTTGCTGTGCTGAAATAAAAGCCCTCC
ATGAAGCAAGTTGAGAGTGTGTCTGGTTGAGATAAACGACACACCCATATCCAGAAAACGTGTGATTTTTCCTTGAAAAAAAATATACCCAACCCCAATG
TACCAAGATTTGGATACATCTTTGCACGAAAATTAATTATGTTTAAACAGGGGAAAATAT
>LE_HBa0041I22_T7_43051 (trimmed for quality and cloning vector)
AGCTTTAAGAATTCTTATATGGATTGAAATAGTCAAAGAAGAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTATGAAAAGGTATTGGTAA
GACAAAATTTTATTTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTATTAGTGTATATACACAAATATGTTTTGATGCGTTTTTATATGG
ATAAATCACATTTATTGAGTACTCCAATGATTATGAGATCGCTTGAAATAAATTATGATTCACTTTGATCTCAAGAGAAGGATGAAGAGTTTCTTGGTGA
TGAAACTCCATATCTTAGTGCAATCAGGGTACTAATGCATTTTGCTTTAACAATACTCGACCAGATACTTGTTTTGCAGTAAATTTACTGGTAACATTCG
ATTCCTCCCAACAAAAGGACATTGAAATGGTGTTATGTATATACTTGAATATCTTTGAAGGACCATAGACATGAGTTCATTCTATTTCGAAGAATTCAAA
TCAAGAGCTGATTGTTACGCAGATGCATAACATTTATCTGATCCGCATAAAACACCGACCTCAAACACGCTATTTATTTGCATATGGAGGTACAATAATA
TCCTGACGATCAATGAAGCAAATGTTGCTGTGCTGAAATAAAAGCCCTCCATGAAGCAAGTTGAGAGTGTGTCTGGTTGAGATAAACGACACACCCATAT
CCAGAAAACGTGTGATTTTTCCTTGAAAAAAAATATACCCAACCCCAATGTACCAAGATTTGGATACATCTTTG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.936297
Expected error %
1.35998
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAK84483.1| Score 77 E Value 7e-19 Identity 68.50% Align. Length 291bp (37.60%) Frame 1
putative copia-like polyprotein [Lycopersicon esculentum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAS79613.1| Score 66 E Value 2e-18 Identity 31.70% Align. Length 518bp (66.93%) Frame 3
putative copia-like polyprotein [Ipomoea trifida]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0041I22
Clone
Clone name
hba-41i22
LE_HBa0041I22
C12HBa0041I22
P041I22
Clone type
BAC
Contamination
none
Estimated length
103,533
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found