Clone Read LE_HBa0053C22_SP6_43530

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0053C22_SP6_43530
Primer
SP6
ID from Seq. Facility
LE_HBa_053_C22-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
721 trimmed for vector and quality, 910 raw
Sequence
>LE_HBa0053C22_SP6_43530 (raw untrimmed)
TAAGGGAATCCCGGAAACTGGGGATATTCTTGGCGACATATGTGTGAATAATGGTTTTGGCTGTTGTTAACACAAAGCTGCTTCGAGATTATGCACAAAT
AGATGTACGATTAAGACAGTTGGCATTTATTGTTAAACATTGGGCTAAGTCTAGAGGGGTGAACGAAACTTACCAGGGGACATTATCTAGCTATGCGTAA
GCCTACATTTCGCTATTTCTTTTTCCGTTCTCTTTTTCCTATTCAATTCACCCCGTACCAAGTGACATTATCTAGCTATGCATAAGCATACATTTTCATG
CTATTTCTTTTTTGCCTCTCTTTCTCTCATTTGTTAGGCTGACTTTTATTTTCTGCTTCCAGGTATGTGTTAATGTGCATTCACTTTCTACAGCAGCGAA
GACCTGCCATCCTTCCATGTCTACAGGTGTGTTTTCTTTAGGTCTGATGTTATGATGTATGTGAAACTTGTAAGTTGTGCACATTACCTGAACTGTTTGA
TTGTTAAATTATCACTACTAGGAGTGTGCAAAATATCTGCTGGTTGGCTGAGCGTGGACGGCTTTTTTCATCAATTGTAATTCAGAAAAGGGTCAAAAAT
ACCCTTAAACTATCTGAAAAGCTCACATATACCCTTAAACTATATTTTGGCTCAAAAAATACCCTTCCCGTCAAACTATTGGGTCAAAAGTGCCCTTTTA
ATCAACGGAAATTATTAAATACCATGTGGATGCCCCATGGCACCCCAATAGATTTTCACTGCCCACATAGACTAAAAGGAAAAGGGTCAAAAGTACCCTT
AAACTATCCGAAAAAGCTTATATTTACCCTTAAACTATTTTTCCGGTTCAAACTACCCCTCCCGTCATACTAGGGGGGCAAAAGTGACCTTATTGGTGAA
ATTTGTAAAT
>LE_HBa0053C22_SP6_43530 (trimmed for quality and cloning vector)
GACATATGTGTGAATAATGGTTTTGGCTGTTGTTAACACAAAGCTGCTTCGAGATTATGCACAAATAGATGTACGATTAAGACAGTTGGCATTTATTGTT
AAACATTGGGCTAAGTCTAGAGGGGTGAACGAAACTTACCAGGGGACATTATCTAGCTATGCGTAAGCCTACATTTCGCTATTTCTTTTTCCGTTCTCTT
TTTCCTATTCAATTCACCCCGTACCAAGTGACATTATCTAGCTATGCATAAGCATACATTTTCATGCTATTTCTTTTTTGCCTCTCTTTCTCTCATTTGT
TAGGCTGACTTTTATTTTCTGCTTCCAGGTATGTGTTAATGTGCATTCACTTTCTACAGCAGCGAAGACCTGCCATCCTTCCATGTCTACAGGTGTGTTT
TCTTTAGGTCTGATGTTATGATGTATGTGAAACTTGTAAGTTGTGCACATTACCTGAACTGTTTGATTGTTAAATTATCACTACTAGGAGTGTGCAAAAT
ATCTGCTGGTTGGCTGAGCGTGGACGGCTTTTTTCATCAATTGTAATTCAGAAAAGGGTCAAAAATACCCTTAAACTATCTGAAAAGCTCACATATACCC
TTAAACTATATTTTGGCTCAAAAAATACCCTTCCCGTCAAACTATTGGGTCAAAAGTGCCCTTTTAATCAACGGAAATTATTAAATACCATGTGGATGCC
CCATGGCACCCCAATAGATTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.966495
Expected error %
0.17806
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g45620.1 Score 94 E Value 8e-20 Identity 32.60% Align. Length 143bp (19.83%) Frame 3
68415.m05672 nucleotidyltransferase family protein low similarity to SP|O13833| Caffeine-induced death protein 1 {Schizosaccharomyces pombe}; contains Pfam profiles PF03828: PAP/25A associated domain, PF01909: Nucleotidyltransferase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAK64074.1| Score 94 E Value 4e-18 Identity 32.60% Align. Length 143bp (19.83%) Frame 3
unknown protein [Arabidopsis thaliana] gb|AAK25891.1| unknown protein [Arabidopsis thaliana] gb|AAC06161.2| expressed protein [Arabidopsis thaliana] ref|NP_566048.1| nucleotidyltransferase family protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T00875 Score 94 E Value 4e-18 Identity 32.60% Align. Length 143bp (19.83%) Frame 3
hypothetical protein At2g45620 [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0053C22
Clone
Clone name
hba-53c22
LE_HBa0053C22
C12HBa0053C22
P053C22
Clone type
BAC
Contamination
none
Estimated length
60,533
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found