Clone Read LE_HBa0009L09_SP6_4384

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0009L09_SP6_4384
Primer
SP6
ID from Seq. Facility
LE_HBa_009_L09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
671 trimmed for vector and quality, 856 raw
Genbank Accession
DU024341
Sequence
>LE_HBa0009L09_SP6_4384 (raw untrimmed)
TATTTTATATTAACGTCGGGCTTTCTTTGAATCACCACGCACAAATTGGAAGAAATGGGTTGAAGCTATGGAGTCTGTTCATTCTTCTGTGTGGAAAAGA
GCAGGTATTTACGAAGCTATAATGGGATCGATTTATAAGGTTTTTATTGATAAAGATTTGATTTTGGGTTTGGTTGAAAGATGGTCCGTCGAGACTAACA
CGTTTGTGTTTCCATGGGGGGAAGCTACGGTTAGTCTTGAGGACATGATGGTTTTGGGAGGGTTCCCTGTTTTAGGTAGCTCTGTTCTGTCCCCTCTTCA
TTCCCCGGAGTTGGTAGAAACTGAAAAGAATCTCGAAGAAGTTCGAAAGGAGCTTATCCTAGCGAAGGCTGATAACCATACTAGATGGTTAAATTGTTTC
ATGTACAGTGGTAGTAATATTGAACATGAAGCTTTTCTGTCTCTATGGTTATCAAGGTTCGTGTTTCCAGGTAATGAGTATGATAAAATAGGTAGTCATG
TTTTTCCTATCGCGGTTAGTCTTGCTAGAGGTATGCGATTAGCGCTTGCTCCTGTTGTGCTTGCCAGTATATATAGGGACTTGGGTATGTTAAAACAGAC
TATGATAATGGTTTCATCAAATGAGCAATGTAGTGATGGAGATACATTTAACATTCTTGAATTCAGTCTTTGGGCCCCATTGTTCTTGGTTCAAGTTTGG
GCTTGGGAGAGATTGGTAACTTTGCACCCTGAGCAGCCTCAGAATTGCAATATGGGGGTTTAGTGGCGTTGAGAATAGGACGAAGGGCACAATGCCAAAA
CAAGTTTTTGATTTAACGTGAGGAACCCCTTTTTAACTCGTTCTGGAAAAAACGTT
>LE_HBa0009L09_SP6_4384 (trimmed for quality and cloning vector)
ACGCACAAATTGGAAGAAATGGGTTGAAGCTATGGAGTCTGTTCATTCTTCTGTGTGGAAAAGAGCAGGTATTTACGAAGCTATAATGGGATCGATTTAT
AAGGTTTTTATTGATAAAGATTTGATTTTGGGTTTGGTTGAAAGATGGTCCGTCGAGACTAACACGTTTGTGTTTCCATGGGGGGAAGCTACGGTTAGTC
TTGAGGACATGATGGTTTTGGGAGGGTTCCCTGTTTTAGGTAGCTCTGTTCTGTCCCCTCTTCATTCCCCGGAGTTGGTAGAAACTGAAAAGAATCTCGA
AGAAGTTCGAAAGGAGCTTATCCTAGCGAAGGCTGATAACCATACTAGATGGTTAAATTGTTTCATGTACAGTGGTAGTAATATTGAACATGAAGCTTTT
CTGTCTCTATGGTTATCAAGGTTCGTGTTTCCAGGTAATGAGTATGATAAAATAGGTAGTCATGTTTTTCCTATCGCGGTTAGTCTTGCTAGAGGTATGC
GATTAGCGCTTGCTCCTGTTGTGCTTGCCAGTATATATAGGGACTTGGGTATGTTAAAACAGACTATGATAATGGTTTCATCAAATGAGCAATGTAGTGA
TGGAGATACATTTAACATTCTTGAATTCAGTCTTTGGGCCCCATTGTTCTTGGTTCAAGTTTGGGCTTGGG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.963564
Expected error %
0.279
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g32120.1 Score 196 E Value 1e-50 Identity 15.60% Align. Length 659bp (98.21%) Frame 3
68414.m03952 expressed protein contains Pfam profile PF04819: Family of unknown function (DUF716) (Plant viral-response family)
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g50830.1 Score 191 E Value 2e-49 Identity 15.70% Align. Length 650bp (96.87%) Frame 3
68414.m05716 hypothetical protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_174491.1| Score 196 E Value 6e-49 Identity 15.60% Align. Length 659bp (98.21%) Frame 3
expressed protein [Arabidopsis thaliana] pir||E86445 hypothetical protein F3C3.9 [imported] - Arabidopsis thaliana gb|AAG23445.1| hypothetical protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_175497.1| Score 191 E Value 1e-47 Identity 15.70% Align. Length 650bp (96.87%) Frame 3
hypothetical protein [Arabidopsis thaliana] gb|AAG50939.1| hypothetical protein [Arabidopsis thaliana] pir||C96545 hypothetical protein F8A12.7 [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0009L09
Clone
Clone name
hba-9l9
LE_HBa0009L09
P009L09
Clone type
BAC
Contamination
none
Estimated length
124,567
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found