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Clone Read LE_HBa0059L14_SP6_47018

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0059L14_SP6_47018
Primer
SP6
ID from Seq. Facility
LE_HBa_059_L14-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
708 trimmed for vector and quality, 837 raw
Sequence
>LE_HBa0059L14_SP6_47018 (raw untrimmed)
GGCCCAACTGTCACGTACTAGCTAGGCCGGAGTTGTCTTCCTCGTTCCAAAATATGTTCGATTGACTTCCTCATTTAAGACGTTCATGATTGCCCGAGCT
TCCGACCCTAAAACTGACCAAGCAAGTCCGAGCACTGATGAACCTGGCCTTCCTTTCCTACCGCAGGTTACTCCCACACCACTTCATTATATTCACATTT
ATATTCTCTTGTTGAAATTTTGTGATAATTGCAGGAGGATTCGAATTTTTTGGTGAAACTGGGAGTAGGTTCAGTGGCGGGAGGAGCAGCGATAAAGTAC
GGAAGTGTAATTTTCTCAGAGATAACAACACCAAACATTTCATTAGCTCTGTTTATGATAACAGCTCCGATGATTGTTGCGGTGGTGCTATTATTCTTAC
AAAGCCGTACAGATTCAACTTCTGCGTGAACAAAGCTCTTCTTCTTCTGTACTAAGGACATCTCAAATTTGTACCAGATGATTTTTATACATTCTTTCCT
GGATTTTGTAGCTCCTGTGTCACAATTAAATATTTACACATGTTTAATAAAACCTTAAATTACATATATATAAGATCCAAGTACAATCTATTGGACTAGT
CCAAATTGGTAGCTAATACTCTAGCTCCGGCCTGGTGGTGACCTGAACAATGTGCAACGATTGCAGAGAATATTATGGTAGATTAGACTAATGTGATCTT
TGATTGCTCAAAACCATATTTACGAAGTATTATGCTGAAAATACAAAGGTGGACAAATATGGAGTAGCCCTCATGTCAACCTTTCCCACCCCCACGAAAT
AACGGGGAGCTTTAGTGGCGCCTTGACTTTTGGGGAA
>LE_HBa0059L14_SP6_47018 (trimmed for quality and cloning vector)
CGGAGTTGTCTTCCTCGTTCCAAAATATGTTCGATTGACTTCCTCATTTAAGACGTTCATGATTGCCCGAGCTTCCGACCCTAAAACTGACCAAGCAAGT
CCGAGCACTGATGAACCTGGCCTTCCTTTCCTACCGCAGGTTACTCCCACACCACTTCATTATATTCACATTTATATTCTCTTGTTGAAATTTTGTGATA
ATTGCAGGAGGATTCGAATTTTTTGGTGAAACTGGGAGTAGGTTCAGTGGCGGGAGGAGCAGCGATAAAGTACGGAAGTGTAATTTTCTCAGAGATAACA
ACACCAAACATTTCATTAGCTCTGTTTATGATAACAGCTCCGATGATTGTTGCGGTGGTGCTATTATTCTTACAAAGCCGTACAGATTCAACTTCTGCGT
GAACAAAGCTCTTCTTCTTCTGTACTAAGGACATCTCAAATTTGTACCAGATGATTTTTATACATTCTTTCCTGGATTTTGTAGCTCCTGTGTCACAATT
AAATATTTACACATGTTTAATAAAACCTTAAATTACATATATATAAGATCCAAGTACAATCTATTGGACTAGTCCAAATTGGTAGCTAATACTCTAGCTC
CGGCCTGGTGGTGACCTGAACAATGTGCAACGATTGCAGAGAATATTATGGTAGATTAGACTAATGTGATCTTTGATTGCTCAAAACCATATTTACGAAG
TATTATGC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.975625
Expected error %
0.0778601
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g15900.1 Score 83 E Value 2e-16 Identity 20.10% Align. Length 188bp (26.55%) Frame 2
68416.m02011 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM62989.1| Score 83 E Value 8e-15 Identity 20.10% Align. Length 188bp (26.55%) Frame 2
unknown [Arabidopsis thaliana] dbj|BAB02874.1| unnamed protein product [Arabidopsis thaliana] ref|NP_566531.1| expressed protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD19416.1| Score 70 E Value 7e-11 Identity 17.70% Align. Length 185bp (26.13%) Frame 2
unknown protein [Oryza sativa (japonica cultivar-group)] dbj|BAD36049.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0059L14
Clone
Clone name
hba-59l14
LE_HBa0059L14
C03HBa0059L14
P059L14
Clone type
BAC
Contamination
none
Estimated length
66,329
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found