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Clone Read LE_HBa0059P18_SP6_47218

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0059P18_SP6_47218
Primer
SP6
ID from Seq. Facility
LE_HBa_059_P18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
698 trimmed for vector and quality, 811 raw
Sequence
>LE_HBa0059P18_SP6_47218 (raw untrimmed)
CCTTCACAAAAAAAGTNCCTNGGCATTTNGGACCGTCACTTGCCTTGTGCAATACCATCAGTCAAGTTGAGCTTGCAGCCACCTCTGTCATTGTTATTCT
TGCTCTCTAGTGGCACCATTTCCTTAACTACATATGGCCCATCTCCATCTTCATCCGACTTTCCATTTGAAGCCTCAAATTTATCGCTTATTGGTTTCGA
TTCCACCAGAATCTCCCTTGCTCTGGCAGTCCCATCATTTGAAGCTGAAGAAGATTGGCTTTGCATGCTAAGGAAGAGTTTCTGATTATTACCAGGTACA
ACAACTTCTTTCTTCATGAGTTTCCTCTTGCGTAAAGATACAGAAATTGGAATATTGTCATCATCTGATGATGATGATTCTATAACTATCATATCACATT
TCTGCAAAAAACCACAACACACAGAGGCATTCATCTTTTCGTGCTGAATTGCAACCTCAGGTACAACATTTTGGTTCTTCCACCATTCCAAGTATCGTCT
GCTGACATCTGACTCGATGAACCTAGAAGGTATATAGAGCTTGACATCTTTAATTGGTCTGTTATAATTAGTCCAAGCAATTTTCGGGATATAATCACTA
GCATGATTCACACAATCAGGCACATCTTGATCAAATCCAAATTGCATTGATACTCTATGTGGATTATATTGTTCAACACAATCCATTCCAACTAGTTCAG
AAGCTCGAACAAGTCGAGCAAAAGTCATGATTTCTCTTCCAATATTTGGTCCAACCACCACATATTCATCCCTCTCCCTGTAAAATCTGCTGATGTCCCA
ATTCCTCACAN
>LE_HBa0059P18_SP6_47218 (trimmed for quality and cloning vector)
ACCGTCACTTGCCTTGTGCAATACCATCAGTCAAGTTGAGCTTGCAGCCACCTCTGTCATTGTTATTCTTGCTCTCTAGTGGCACCATTTCCTTAACTAC
ATATGGCCCATCTCCATCTTCATCCGACTTTCCATTTGAAGCCTCAAATTTATCGCTTATTGGTTTCGATTCCACCAGAATCTCCCTTGCTCTGGCAGTC
CCATCATTTGAAGCTGAAGAAGATTGGCTTTGCATGCTAAGGAAGAGTTTCTGATTATTACCAGGTACAACAACTTCTTTCTTCATGAGTTTCCTCTTGC
GTAAAGATACAGAAATTGGAATATTGTCATCATCTGATGATGATGATTCTATAACTATCATATCACATTTCTGCAAAAAACCACAACACACAGAGGCATT
CATCTTTTCGTGCTGAATTGCAACCTCAGGTACAACATTTTGGTTCTTCCACCATTCCAAGTATCGTCTGCTGACATCTGACTCGATGAACCTAGAAGGT
ATATAGAGCTTGACATCTTTAATTGGTCTGTTATAATTAGTCCAAGCAATTTTCGGGATATAATCACTAGCATGATTCACACAATCAGGCACATCTTGAT
CAAATCCAAATTGCATTGATACTCTATGTGGATTATATTGTTCAACACAATCCATTCCAACTAGTTCAGAAGCTCGAACAAGTCGAGCAAAAGTCATG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.948127
Expected error %
0.263017
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g32120.1 Score 95 E Value 3e-20 Identity 17.10% Align. Length 251bp (35.96%) Frame 3
68414.m03952 expressed protein contains Pfam profile PF04819: Family of unknown function (DUF716) (Plant viral-response family)
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g16050.1 Score 89 E Value 3e-18 Identity 16.50% Align. Length 248bp (35.53%) Frame 3
68417.m02435 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_174491.1| Score 95 E Value 1e-18 Identity 17.10% Align. Length 251bp (35.96%) Frame 3
expressed protein [Arabidopsis thaliana] pir||E86445 hypothetical protein F3C3.9 [imported] - Arabidopsis thaliana gb|AAG23445.1| hypothetical protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB10384.1| Score 89 E Value 1e-16 Identity 16.50% Align. Length 248bp (35.53%) Frame 3
hypothetical protein [Arabidopsis thaliana] emb|CAB78647.1| hypothetical protein [Arabidopsis thaliana] pir||F71426 hypothetical protein d14065w - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0059P18
Clone
Clone name
hba-59p18
LE_HBa0059P18
C07HBa0059P18
P059P18
Clone type
BAC
Contamination
none
Estimated length
95,472
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found