Clone Read LE_HBa0064P10_SP6_49506

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0064P10_SP6_49506
Primer
SP6
ID from Seq. Facility
LE_HBa_064_P10-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
140 trimmed for vector and quality, 911 raw
Sequence
>LE_HBa0064P10_SP6_49506 (raw untrimmed)
TCCCCGGTTAATTTTTCCTGGAAGCAAGTTCTCTATCTGAAGTACCTTTAAAGAGGCCTTNTGTANNTANTANTGGAAGGATTATCCTCGAAAGAGANAT
NATNTNAGTTGTANNAGTGANTNGNGTGANTATGANTGATAGTAANNGNTNNTTNAGNTTNT
ATATTATTGGAAATGANAGAGAGGTTTATATGAAAGAA
TANTATNNTTNTAGGTTTTGTTGGGGNNTTTGNNTTTGAATGGAATGGTTGAAGTTATAATTAAAGAAATGGATTTGTTGTTGTNATAATTGGTTTGAGT
TTGTATNAAGTGTTGAAGGGGAATAAATGTTGGTTTTTGAGTAGAATAATATGATTTATGATTTGTAATGTTGTAAAAGAAAAAAAAAAAAAAAAAGTTG
TATTGTTATATATAATTGTTATGATATGAAATAGAAAGTTGATAATTTAGTTGGTTGAATAAGAATTATATAAAATATTGGTTGATTATTGATTTGGTTA
GGAATTTTTAGTATGGTTTTTGGTTTTATATTAGTTGTTGTTGNTAATATTTATATTTATGTATGAAGAAATTAGATAGATAATGTTAGAAAAAATAATG
ATAAATTGATAATATTTATAATATTATGATAATATGTAATTTGAATTTATGTATTTATTTTAAAAAAGATGTATTTATTATATATTGTAATAAAATTTTA
ATAAGAATGTAATTATAATAGTTATAAATAATTTATTAAGATTAAGAAAGGATAAGTGATATAAAGAAATGATTAGTAGAAAAATAAAAATATATTTAAT
TAAATGATTATGGTATTTAGAAATTATTGGTATTTTAAATGTTATTTATATAGTATGAAATTTTGATAATTATTATATATTTATATGAATATTTATATAA
GTATATTGTAA
>LE_HBa0064P10_SP6_49506 (trimmed for quality and cloning vector)
ATATTATTGGAAATGANAGAGAGGTTTATATGAAAGAATANTATNNTTNTAGGTTTTGTTGGGGNNTTTGNNTTTGAATGGAATGGTTGAAGTTATAATT
AAAGAAATGGATTTGTTGTTGTNATAATTGGTTTGAGTTT

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.846146
Expected error %
14.4176
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0064P10
Clone
Clone name
hba-64p10
LE_HBa0064P10
P064P10
Clone type
BAC
Contamination
none
Estimated length
65,937
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found