Clone Read LE_HBa0064P10_T7_49507

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0064P10_T7_49507
Primer
T7
ID from Seq. Facility
LE_HBa_064_P10-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
759 trimmed for vector and quality, 817 raw
Sequence
>LE_HBa0064P10_T7_49507 (raw untrimmed)
CGGGGACCCGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTAACCACAAATTTAAGGAAAAGATTTCCATGGAGAAGGATAAGTGGGACCCACT
CAACACAAATCTTCTACCAGCCTTACACTTTCTAAGCCCCCACCCCCCCACCCCCTACCCCAAAGAAAACTACCAATGAGCCTCAAAAAACAAATCTTTG
CAAACAAATATAACACAATGAACTTGTAAACTGAGAAATTTTAGTGATTTCAAGAATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATT
TAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGG
AGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGA
CAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAA
TTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAGGTTTGTTTGTTACAATTCTT
CTTATAAATAGCTCAATAGAAACATTAGTACTCTGTCCCTTATCATGTGAAGTTATTTAGATGAGTTTAACTTCTATATACTGACGATCCGAGCACTTAA
AAAATAACTAGTAATTC
>LE_HBa0064P10_T7_49507 (trimmed for quality and cloning vector)
AGCTTAACCACAAATTTAAGGAAAAGATTTCCATGGAGAAGGATAAGTGGGACCCACTCAACACAAATCTTCTACCAGCCTTACACTTTCTAAGCCCCCA
CCCCCCCACCCCCTACCCCAAAGAAAACTACCAATGAGCCTCAAAAAACAAATCTTTGCAAACAAATATAACACAATGAACTTGTAAACTGAGAAATTTT
AGTGATTTCAAGAATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGG
ACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTAC
ACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTA
ATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAG
GAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAGGTTTGTTTGTTACAATTCTTCTTATAAATAGCTCAATAGAAACATTAGTACTCTGTCCCTTA
TCATGTGAAGTTATTTAGATGAGTTTAACTTCTATATACTGACGATCCGAGCACTTAAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.94516
Expected error %
0.27532
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g54050.1 Score 149 E Value 1e-36 Identity 25.40% Align. Length 302bp (39.79%) Frame 1
68416.m05976 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative strong similarity to fructose-1,6-bisphosphatase [Brassica napus] GI:289367; identical to SP|P25851 Fructose-1,6-bisphosphatase, chloroplast precursor (EC 3.1.3.11) (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) {Arabidopsis thaliana}; contains Pfam profile PF00316: fructose-1,6-bisphosphatase
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD25541.1| Score 244 E Value 1e-63 Identity 32.10% Align. Length 389bp (51.25%) Frame 1
fructose-1,6-bisphosphatase precursor [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T07134 Score 159 E Value 7e-38 Identity 23.70% Align. Length 383bp (50.46%) Frame 1
fructose-bisphosphatase (EC 3.1.3.11) precursor, chloroplast - soybean sp|Q42796|F16P_SOYBN FRUCTOSE-1,6-BISPHOSPHATASE, CHLOROPLAST PRECURSOR (D-FRUCTOSE-1,6-BISPHOSPHATE 1-PHOSPHOHYDROLASE) (FBPASE) gb|AAA33956.1| fructose-1,6-bisphosphatase
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0064P10
Clone
Clone name
hba-64p10
LE_HBa0064P10
P064P10
Clone type
BAC
Contamination
none
Estimated length
65,937
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found