Clone Read LE_HBa0066I09_SP6_50704

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0066I09_SP6_50704
Primer
SP6
ID from Seq. Facility
LE_HBa_066_I09-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1031 raw
Sequence
>LE_HBa0066I09_SP6_50704 (raw untrimmed)
AACATACATGATGGNTGATGAAGATGCAGAGAAGCTGAGTCCTTCTCTATTGCGACATANAGTGATATATACATGGACGTGCAAGCAGAGGAGAGCCTGC
AGACGACACATCGTGTGTGAGCTAGCCACCTGTCCTGGTGCGGGTGTCACAGNTGATTACGCGATCTTAATCATGGATTCAGTACCGCTGGGGGAGGATG
ANGTCGAGGCACGCCGAGCGGCTCACGCGGAGACTGACACGTACGCNTAGCTTGCATTACTTTTAGCTAGATTTTGGGAATACCAGCGTCGAACCTTCGT
GTCAGATCGTCATGTGATACGATCGGCACGTACCTAATTACTCTGTACATCTTGTTTGGCGTCTATGTTATGACAGTTGTGGTTATATAGGAGATGGAGG
AGGGAGTGTAGGGNGTGACCGAATCCACTAGCAAATGTGGAGTGCTCAGTTATGTCAATCNGATCGTCTGCCAGTATGNATACATATCTCCGATACATAC
CGACCGTATGTAATGGTATTTATTATGGTTGTGAGAATGCAGCAGTTGTTATATTTTGTCCATCTTCCGCCGCTCTCTCACGATGCGGACGCACCTCTTA
GAGAAAGGAGATAGCTGACAGTTCCTTGATTGGTGAGAGGCTATCAGCACTCTCTCACGGTCAAGTGCTATCTGACTTCGTAGTCGCACGTACTGATATA
CTATCATGAGCTTACTATGTTCTCTACGCAGTAGTTCAGTCTTGGAATGGCATTGCGTAGGGTGGATACCGTGTACTCCTGCTTCGGTCACTCGCTTGCT
TNTGCATGTGCTTTGCATTCTTCTTACGTGTGACAATG
ACTACTACTATATCTGCCAATATCACTTCCTCTTCTTTATATTTTATATTATTAATAGTGCT
TGTTGTATCTTCTATCTTTCCTCCCTATATTTCCCTGATCTGTTCCTAATTATTTTCACTACTGCCTTTCTATTCTCCTCTTACTCTCCTTCTCTACTGT
CTCTCACTTGCTCGCTTGCGCTCTTTCACCT
>LE_HBa0066I09_SP6_50704 (trimmed for quality and cloning vector)
AC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
3.3129
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0066I09
Clone
Clone name
hba-66i9
LE_HBa0066I09
C06HBa0066I09
P066I09
Clone type
BAC
Contamination
none
Estimated length
105,006
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found