Clone Read LE_HBa0066I09_T7_50705

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0066I09_T7_50705
Primer
T7
ID from Seq. Facility
LE_HBa_066_I09-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
5 trimmed for vector and quality, 938 raw
Sequence
>LE_HBa0066I09_T7_50705 (raw untrimmed)
TTTTGAGGGGGGGGGATCGCTCCGGGGGTTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTTAAATAGCAAATAGAGAACCTATCGAAACAAGGGGC
TTTAGAATATACTAGGGGTAGACCGCGCGCATCTTATCATGCCCATGAGGCCTACGCCTGTGAGGGACATGACATACCAGAGAGAGACGAATATAGCGCA
TAGGTATTACTAGCTTTGGTATCTCTCATGTGCTTAGGTCTCTAGACTACTGATGGTCGAATACGCTTCAAGTGCATGGTTTGACTTACGAGCCACCCCT
ACAGTTGCGGTGCAGGTCGTGGCCGAACCAGATAGGATTCGCGTACATTGACCATCCCTCACACATGGTGGGGGGGCCGATTAATAATGGTGAAAACAAA
CGCCTGGTAAATAAACGAAAATCCCTTTCCGTGTTAACTTCTCTTCCGATCACTTCCTTCTCCTTTCCTCCTTTCCCCAAGGCATCTAAATCCCTTTATT
TTCTTTCTTGTTCTCCCACTCAATTCTATTCAGGCTACCCTGGCCTCGTCCACTTGGCATTACATCCAGAGATCGCCTCATCTTACATCTCAAACCTTCC
ATTACATCATGATCAACTTACTATCATCGTGCCCAGATTCTCCTTAGACCCACTATATTTACCTTGCATCTGCCTTGTTAACTATACTCGCATTGCCGTT
TCTAAAACCATATTCTTCCTACCATACCCTCTCCCTATCCCGCTCCCCTCTCTCTTACTTCTCGCCCCCCCTAACACCTCTCTGCTTCAAACACACAGTC
ATTACCATACATCCACGCCGGTAATTCGACCATCGACTCCCTCCCTATTCTCACAAATTTATTACCCTATTTTGATCCCTCTTGACGCTCCTCTTGTCTA
CGCGCCCTCCGCCAGCCTCTCTCCGCACCCCCATCACG
>LE_HBa0066I09_T7_50705 (trimmed for quality and cloning vector)
AGCTT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
not recorded
Expected error %
0.420535
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0066I09
Clone
Clone name
hba-66i9
LE_HBa0066I09
C06HBa0066I09
P066I09
Clone type
BAC
Contamination
none
Estimated length
105,006
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found