Clone Read LE_HBa0083F17_T7_52113

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0083F17_T7_52113
Primer
T7
ID from Seq. Facility
LE_HBa_083_F17-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
690 trimmed for vector and quality, 838 raw
Sequence
>LE_HBa0083F17_T7_52113 (raw untrimmed)
ACTCGGGTCCGAGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCCATAACAATGCCATCTATTCCCATAATAATCACAATAAGATTCAAAACTA
ACCACACTCATATCACTATGTGTTTAGCTTTGACCCAAAAATTCACCAAAATTTATAGTCAAGTTTCTAATCTTGATGTCAATTAACATGATAATTCTCA
TATTTTTAAAATTTCAAACCTAGAGTTGAGTTTCAGTTTCTCCCATATACTAGATATAATAATATTCATATAAGTTTATACCTTTATATTGAATTAAATA
TAATAATTTATCAAACTTGAATAATTATATAATATGATGAATATAAAACAAACCTATTTAAAAATAAAATAAAAATAAGAACCAGTACGTTAATCTCTAT
ATTATATATATATATATATATATATATATATATATATATACACCTATAATCCATAAATAATACAAAATAAATAATTAAAAATCTGAATTGGCGAAATTGG
CAATCATCGACCAATGATTGCCATTAATGATGTAAACCTAACTTTTTCAATTGTGTTTTTCTCTTTCCCACATATTAATAATAATAATTTACATTATAAT
AATATTTATACATAATCATAGACTTACATATTAATGTAATGATAATTTTTACCTGACAATTGACGAGGTCGGCAACTCCTACAATAGCCGCGCAGAGTTC
TGCTTAAATAATTTCTTGTTTTGTTTTGTTTTTCTAAAAAAAAATTAATTATGTACTAAAAGTGATAACTTTTTCCCAACTATTTTTATTAAATATAGGT
CAAAAAAACATTGGTTATTAAATAAATTACCATTTTAG
>LE_HBa0083F17_T7_52113 (trimmed for quality and cloning vector)
TCTAGAGTCGACCTGCAGGCATGCAAGCTTCCATAACAATGCCATCTATTCCCATAATAATCACAATAAGATTCAAAACTAACCACACTCATATCACTAT
GTGTTTAGCTTTGACCCAAAAATTCACCAAAATTTATAGTCAAGTTTCTAATCTTGATGTCAATTAACATGATAATTCTCATATTTTTAAAATTTCAAAC
CTAGAGTTGAGTTTCAGTTTCTCCCATATACTAGATATAATAATATTCATATAAGTTTATACCTTTATATTGAATTAAATATAATAATTTATCAAACTTG
AATAATTATATAATATGATGAATATAAAACAAACCTATTTAAAAATAAAATAAAAATAAGAACCAGTACGTTAATCTCTATATTATATATATATATATAT
ATATATATATATATATATATACACCTATAATCCATAAATAATACAAAATAAATAATTAAAAATCTGAATTGGCGAAATTGGCAATCATCGACCAATGATT
GCCATTAATGATGTAAACCTAACTTTTTCAATTGTGTTTTTCTCTTTCCCACATATTAATAATAATAATTTACATTATAATAATATTTATACATAATCAT
AGACTTACATATTAATGTAATGATAATTTTTACCTGACAATTGACGAGGTCGGCAACTCCTACAATAGCCGCGCAGAGTTCTGCTTAAAT

This is probably not a useful sequence.

Problems:
  • Probable foreign DNA contamination
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.881251
Expected error %
0.118954
Sequence Annotations 
Automatic Annotations
NCBI UniVec vector sequences (screening/vector/UniVec)NCBI BLAST
gnl|uv|X65303.1:1-108 Score 64 E Value 2e-11 Identity 100.00% Align. Length 31bp (4.49%) Frame 2
Cloning vector pGEM-4
NCBI UniVec vector sequences (screening/vector/UniVec)NCBI BLAST
gnl|uv|X65332.1:2436-2462-49 Score 62 E Value 8e-11 Identity 100.00% Align. Length 30bp (4.35%) Frame 2
Cloning vector pSP72
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0083F17
Clone
Clone name
hba-83f17
LE_HBa0083F17
P083F17
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found