Clone Read LE_HBa0002D20_T7_52791

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0002D20_T7_52791
Primer
T7
ID from Seq. Facility
LE_HBa_002_D20-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
650 trimmed for vector and quality, 794 raw
Genbank Accession
DU078361
Sequence
>LE_HBa0002D20_T7_52791 (raw untrimmed)
TCGGGTCCGGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTACCAATTGCAGAGGGCTTGAAGTCCTTTATCTCGGAGAAAACTTGTTGAATGA
TACATTTCCCAAACGTGTTAGGATCACTTCCTAGGCTGCAAGTTCTCAGTTTGAGATCCAATAAGTTACATGGCCCGATTACCATTACAAGAAACCAAGT
CTTATTCTCAAAGCTGAAAATCCTTGATCTCTCTTATAATGACTTCACTGGAAACCTGTCAGAAAGGTTCTTCAACAACTTGAAATCCATGATAATAGAA
GATCAAACGGGAACTCCTTTAACTTATATTGGAGAAGTTCGATACCATGATTCCTTGACATTGTCTATAAAAGGACAGCAGATTGAACTTGTGAGGATTC
TTTCTATCTTCACAACCATTGATTTCTCAAATAACAAATTTAAAGGTGATGTACCAAAATCCATTGGCAATCTTGGTTCACTTCGCGGGTTGAATTTGTC
ACACAACAGCCTTATTGGACCTATACCTCAGTCTTTTGGAAATTTATCCGTTCTTGAGTCGTTAGACCTTTCGTGGAACCAACTTTCAGGGAACGTTCCT
CAAGAAGTTGCTTCACTGAAATCTCTTGCTGTCATGAAATCTCTCACAGAACCGCCTGATGGGACGCATACCTAGAGGTCCACAGCTTTGATACCTTTGA
AAATGAATTCATATTTCGGGAAAGGGGGGATTAATGTGGATTTTCCCTTGGTCAAAAAACTGCCGAAGAAAATGAAAAGCCCCCTTCCTACTGG
>LE_HBa0002D20_T7_52791 (trimmed for quality and cloning vector)
AGCTTACCAATTGCAGAGGGCTTGAAGTCCTTTATCTCGGAGAAAACTTGTTGAATGATACATTTCCCAAACGTGTTAGGATCACTTCCTAGGCTGCAAG
TTCTCAGTTTGAGATCCAATAAGTTACATGGCCCGATTACCATTACAAGAAACCAAGTCTTATTCTCAAAGCTGAAAATCCTTGATCTCTCTTATAATGA
CTTCACTGGAAACCTGTCAGAAAGGTTCTTCAACAACTTGAAATCCATGATAATAGAAGATCAAACGGGAACTCCTTTAACTTATATTGGAGAAGTTCGA
TACCATGATTCCTTGACATTGTCTATAAAAGGACAGCAGATTGAACTTGTGAGGATTCTTTCTATCTTCACAACCATTGATTTCTCAAATAACAAATTTA
AAGGTGATGTACCAAAATCCATTGGCAATCTTGGTTCACTTCGCGGGTTGAATTTGTCACACAACAGCCTTATTGGACCTATACCTCAGTCTTTTGGAAA
TTTATCCGTTCTTGAGTCGTTAGACCTTTCGTGGAACCAACTTTCAGGGAACGTTCCTCAAGAAGTTGCTTCACTGAAATCTCTTGCTGTCATGAAATCT
CTCACAGAACCGCCTGATGGGACGCATACCTAGAGGTCCACAGCTTTGAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.964072
Expected error %
0.724631
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g11010.1 Score 147 E Value 3e-36 Identity 45.70% Align. Length 603bp (92.77%) Frame 1
68416.m01329 disease resistance family protein / LRR family protein contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; similar to disease resistance protein [Lycopersicon esculentum] gi|3894383|gb|AAC78591
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g28890.1 Score 143 E Value 1e-35 Identity 44.60% Align. Length 573bp (88.15%) Frame 1
68416.m03606 leucine-rich repeat family protein contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; contains similarity to Hcr2-0B [Lycopersicon esculentum] gi|3894387|gb|AAC78593
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAA88636.1| Score 151 E Value 9e-41 Identity 47.50% Align. Length 640bp (98.46%) Frame 1
elicitor-inducible LRR receptor-like protein EILP [Nicotiana tabacum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAC15780.1| Score 148 E Value 1e-38 Identity 46.60% Align. Length 582bp (89.54%) Frame 1
Cf-2.2 [Lycopersicon pimpinellifolium]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0002D20
Clone
Clone name
hba-2d20
LE_HBa0002D20
C07HBa0002D20
P002D20
Clone type
BAC
Contamination
none
Estimated length
118,109
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found