Clone Read LE_HBa0003O07_SP6_54060

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0003O07_SP6_54060
Primer
SP6
ID from Seq. Facility
LE_HBa_003_O07-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
721 trimmed for vector and quality, 789 raw
Genbank Accession
DU079412
Sequence
>LE_HBa0003O07_SP6_54060 (raw untrimmed)
GAATTTGACTCTTTACGTCGTCGGAATTGTTTTTTTCTTCCCCAATCTTTTCTCGACTGCGGTCAAAGCGTCCGGATTAGATTGATCGAATCTGACAGCA
CCCCGCACCCGCACCAGAGTCGTGTCGAGATGGGTTCTCCTGCAAAAATAAAGAGTCCGCGCAACTTAGGTTTCATAGGCAATGACATAAAGGGCTTCAA
AAGCCCAAGCTGATTCCCAGTTGTTGAACTCTTGAGTAATTGCATTTGCAGCTTTTTCAATAGCCTAGTAAGATTCAACCAAGTTTTTGAGTCGATAACT
TTGTAAGGCACGGAATAGAGAGAGTAGTATATCTGCATACAGAGAGTATCTATAAGGCTTTCTGATTACTCTTCTAGCATTCTAGAAAGTGATGAGCGCA
TCGAGTAGAGAGAGGAGAAAAGATGAAAAGATGAATTTGAAGAGATAGAGAAAATAAGGCATAGAGACTTGGTGTCTTGAGATGAAACAACATCGGAGAA
GTGATTTAGGAAGTCAGTAATACATCTGTGAGCTTCTCCCATGCTTAAATAGGCTGAGGCCATTCTTTCGTCTTCAATCCAATTGAAGCTTTTGGTTTTG
AGCAGAAACCCGCAGGGGTTTATGTCTTTCTCCGCGACTCACAACAATGACAACACCCTCTTTCTAAGGCTAAAGTTATCTTATTCAATACCCATTTATT
GTGTATTTTCCTTTGAATCCAGGTGATGTTCTGTGAACTGTTGTAGGTCATTTCTTGAGTTTGGATGCTAGTGAAGAAATGGTAGGTGA
>LE_HBa0003O07_SP6_54060 (trimmed for quality and cloning vector)
TACGTCGTCGGAATTGTTTTTTTCTTCCCCAATCTTTTCTCGACTGCGGTCAAAGCGTCCGGATTAGATTGATCGAATCTGACAGCACCCCGCACCCGCA
CCAGAGTCGTGTCGAGATGGGTTCTCCTGCAAAAATAAAGAGTCCGCGCAACTTAGGTTTCATAGGCAATGACATAAAGGGCTTCAAAAGCCCAAGCTGA
TTCCCAGTTGTTGAACTCTTGAGTAATTGCATTTGCAGCTTTTTCAATAGCCTAGTAAGATTCAACCAAGTTTTTGAGTCGATAACTTTGTAAGGCACGG
AATAGAGAGAGTAGTATATCTGCATACAGAGAGTATCTATAAGGCTTTCTGATTACTCTTCTAGCATTCTAGAAAGTGATGAGCGCATCGAGTAGAGAGA
GGAGAAAAGATGAAAAGATGAATTTGAAGAGATAGAGAAAATAAGGCATAGAGACTTGGTGTCTTGAGATGAAACAACATCGGAGAAGTGATTTAGGAAG
TCAGTAATACATCTGTGAGCTTCTCCCATGCTTAAATAGGCTGAGGCCATTCTTTCGTCTTCAATCCAATTGAAGCTTTTGGTTTTGAGCAGAAACCCGC
AGGGGTTTATGTCTTTCTCCGCGACTCACAACAATGACAACACCCTCTTTCTAAGGCTAAAGTTATCTTATTCAATACCCATTTATTGTGTATTTTCCTT
TGAATCCAGGTGATGTTCTGT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.975971
Expected error %
0.23589
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g19560.1 Score 92 E Value 7e-26 Identity 58.40% Align. Length 382bp (52.98%) Frame 1
68415.m02285 proteasome protein-related weak similarity to 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome regulatory subunit S3) (p58) (Transplantation antigen P91A) (Tum-P91A antigen) (Swiss-Prot:P14685) [Mus musculus]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAC43481.1| Score 92 E Value 3e-24 Identity 58.40% Align. Length 382bp (52.98%) Frame 1
unknown protein [Arabidopsis thaliana] ref|NP_179546.2| proteasome protein-related [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD10155.1| Score 92 E Value 3e-24 Identity 58.40% Align. Length 382bp (52.98%) Frame 1
unknown protein [Arabidopsis thaliana] pir||C84578 hypothetical protein At2g19560 [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0003O07
Clone
Clone name
hba-3o7
LE_HBa0003O07
P003O07
Clone type
BAC
Contamination
none
Estimated length
92,613
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found