Clone Read LE_HBa0003O07_T7_54061

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0003O07_T7_54061
Primer
T7
ID from Seq. Facility
LE_HBa_003_O07-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
700 trimmed for vector and quality, 794 raw
Genbank Accession
DU079413
Sequence
>LE_HBa0003O07_T7_54061 (raw untrimmed)
ACCTGTGATCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTAATAGGGATTGCATCTGAATGGTTCATAGATTAGGATATTGTCAACTGGC
ATACGTGGGATGATTCGGCTCGATGTTTAGTTCAAAAATTCCAATATAATATTGACATAGTGCCAAACCGCTCCTCGTTAGCCAATACGAGGAAAAATAC
CACAAAATTTTTTTGTGAATATGTCGTCAGATGGAGGGAACAAGTTGCTAGTCTTAAACCACCAATGAAGGAGTCTGAGATGATTGACATTTTCCTCTAA
GCACAAGAACCTGATTACATTCATTATTTGTTGTTTGCCGTTGGGAAGACACTCGTTGAAGTTATTAAGGTTGGGAAATGGTTGAAAATAGAATCAAATC
TGGAAAGATTGTAAGCCAAGCTACCTTAAAAGCCACAACACAAGTGCTTCAAAATGGTTTCGGAAATATTAGAGGGAAGATGAGAAGGGAGGATGCAGCC
ACTGATGTATCATCTCCTCGGACCTAAGTCCAAGATAATCCCTCGCAACACTATTTCCGAAGCTCCACAATATTCTGTCCTATACTCTCCCTATATCATT
TTTAGTGCATAACCAATTGCACCCCCTTCTTATCCACAATGGCGTGCACCAATTCCCCAAAATAATACACCACCCCCACAAGTTCACCAAAATACTACTA
AAATTCCTTTTTGTCCTACACCACAATACAACAAGGGAAATTGAGCTAAAGATGAGTTCACTCCAATTGGGGAGTCATATGATAACTTGTTTAG
>LE_HBa0003O07_T7_54061 (trimmed for quality and cloning vector)
AGCTTAATAGGGATTGCATCTGAATGGTTCATAGATTAGGATATTGTCAACTGGCATACGTGGGATGATTCGGCTCGATGTTTAGTTCAAAAATTCCAAT
ATAATATTGACATAGTGCCAAACCGCTCCTCGTTAGCCAATACGAGGAAAAATACCACAAAATTTTTTTGTGAATATGTCGTCAGATGGAGGGAACAAGT
TGCTAGTCTTAAACCACCAATGAAGGAGTCTGAGATGATTGACATTTTCCTCTAAGCACAAGAACCTGATTACATTCATTATTTGTTGTTTGCCGTTGGG
AAGACACTCGTTGAAGTTATTAAGGTTGGGAAATGGTTGAAAATAGAATCAAATCTGGAAAGATTGTAAGCCAAGCTACCTTAAAAGCCACAACACAAGT
GCTTCAAAATGGTTTCGGAAATATTAGAGGGAAGATGAGAAGGGAGGATGCAGCCACTGATGTATCATCTCCTCGGACCTAAGTCCAAGATAATCCCTCG
CAACACTATTTCCGAAGCTCCACAATATTCTGTCCTATACTCTCCCTATATCATTTTTAGTGCATAACCAATTGCACCCCCTTCTTATCCACAATGGCGT
GCACCAATTCCCCAAAATAATACACCACCCCCACAAGTTCACCAAAATACTACTAAAATTCCTTTTTGTCCTACACCACAATACAACAAGGGAAATTGAG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.969162
Expected error %
0.113371
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39964.1| Score 181 E Value 2e-65 Identity 75.40% Align. Length 511bp (73.00%) Frame 2
putative gag polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU90285.1| Score 178 E Value 5e-58 Identity 75.40% Align. Length 457bp (65.29%) Frame 2
putative gag/pol polyprotein, 3'-partial [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0003O07
Clone
Clone name
hba-3o7
LE_HBa0003O07
P003O07
Clone type
BAC
Contamination
none
Estimated length
92,613
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found