Clone Read LE_HBa0074N03_SP6_55540

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0074N03_SP6_55540
Primer
SP6
ID from Seq. Facility
LE_HBa_074_N03-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
752 trimmed for vector and quality, 887 raw
Genbank Accession
DU080164
Sequence
>LE_HBa0074N03_SP6_55540 (raw untrimmed)
CCCCGGTTTTCTTTTGTGTTATGGTATATGTTTCATAGTTAAATGAGAAAGAGCGCAGGTTGGTGCCGCACGTGATCCCCTTAGGCGAGGAAAAGAGAAA
AATATATTGGTCTTAATGAGAATCAGTGGAGATTAAGGCTGTAAAAGAATTCTCCTTTTCTTGGTCGAGCGTGTGTGTATCATCTTGCACTTCTAAGTCT
GTACTTGTTAGTGTCATTTGCATTTGTGGTTTTCATTTCTGTGCTATGTATTGTATCACTGTTAATATGTTTAACTCAGGCTTTGTGCAACAAAATGAAC
TTGTTGAATCATTCTCATGCTTAGTACATAAACTTCTGAGGTTATACAACATGCATTGCTAACTACACAGAATATGCTAGGCATGTCATAGAGAAACCAT
ATACTTAATAAAAATATTTGGATCTTCACCTTGTTTTCTAACCCAAAACTAGAATGCAATGATTAAATCACTAATCAACAAATTGTTTAATGCATTTTGA
AACAAAATCTTCAACATTTTTATCAGATGTTCCACCTTCTTGAACAGCTTCTTTAGCCAAATCCTTCCATTTGAGTGCATTTTTCTTCATTTCTTTCCCT
TCCTCTCCTTGTAACACTGTCCTCACACATTCCTCAATTTCTTCTCTTCCAACAATCCCATTTTCATTAACTTTAACTCTCACTCCTACACTCCAAACAT
CTTGCACAAATTTTGCATTTGTTGTTTGATCAGTCCATTGTGGCATTACCACCATTGGCACTCCAAAGCTCAATGCTTCAACCGTCGAATTCCATCCCCC
ATGTGAGAAAAAACAACCAATTGCCTTATTAACCACACTTGTAGTTGTGGACTCCAGTTTAATAATTATCCTTTCTCAGAATTTTCT
>LE_HBa0074N03_SP6_55540 (trimmed for quality and cloning vector)
TATATGTTTCATAGTTAAATGAGAAAGAGCGCAGGTTGGTGCCGCACGTGATCCCCTTAGGCGAGGAAAAGAGAAAAATATATTGGTCTTAATGAGAATC
AGTGGAGATTAAGGCTGTAAAAGAATTCTCCTTTTCTTGGTCGAGCGTGTGTGTATCATCTTGCACTTCTAAGTCTGTACTTGTTAGTGTCATTTGCATT
TGTGGTTTTCATTTCTGTGCTATGTATTGTATCACTGTTAATATGTTTAACTCAGGCTTTGTGCAACAAAATGAACTTGTTGAATCATTCTCATGCTTAG
TACATAAACTTCTGAGGTTATACAACATGCATTGCTAACTACACAGAATATGCTAGGCATGTCATAGAGAAACCATATACTTAATAAAAATATTTGGATC
TTCACCTTGTTTTCTAACCCAAAACTAGAATGCAATGATTAAATCACTAATCAACAAATTGTTTAATGCATTTTGAAACAAAATCTTCAACATTTTTATC
AGATGTTCCACCTTCTTGAACAGCTTCTTTAGCCAAATCCTTCCATTTGAGTGCATTTTTCTTCATTTCTTTCCCTTCCTCTCCTTGTAACACTGTCCTC
ACACATTCCTCAATTTCTTCTCTTCCAACAATCCCATTTTCATTAACTTTAACTCTCACTCCTACACTCCAAACATCTTGCACAAATTTTGCATTTGTTG
TTTGATCAGTCCATTGTGGCATTACCACCATTGGCACTCCAAAGCTCAATGC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.94137
Expected error %
0.189082
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g05680.1 Score 127 E Value 7e-30 Identity 21.70% Align. Length 275bp (36.57%) Frame 1
68414.m00589 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g43820.1 Score 124 E Value 6e-29 Identity 20.20% Align. Length 281bp (37.37%) Frame 1
68415.m05447 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAI62049.1| Score 130 E Value 3e-29 Identity 19.40% Align. Length 287bp (38.16%) Frame 1
UDP-xylose phenolic glycosyltransferase [Lycopersicon esculentum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF61647.1| Score 129 E Value 8e-29 Identity 18.80% Align. Length 287bp (38.16%) Frame 1
UDP-glucose:salicylic acid glucosyltransferase [Nicotiana tabacum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0074N03
Clone
Clone name
hba-74n3
LE_HBa0074N03
C08HBa0074N03
P074N03
Clone type
BAC
Contamination
none
Estimated length
103,934
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found