Clone Read LE_HBa0101D04_SP6_56598

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0101D04_SP6_56598
Primer
SP6
ID from Seq. Facility
LE_HBa_101_D04-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
602 trimmed for vector and quality, 743 raw
Genbank Accession
DU080415
Sequence
>LE_HBa0101D04_SP6_56598 (raw untrimmed)
GATTTCCCATGAACAGAAGACTATTCAGCTTAAATTTTTTTTTTTGGAGACAAGTAACTTTTAGCCTACAGATAATTGTGTTTTATAGTGATTGCTGAAT
TACAAAGTTCTTACCTTGTGCAGAAGAATTTGTCAGGCCTGCCACATTATTCTGATGAAGCCAGGCTTAAACATTAGCCACAAGCTTTATCTACCTCCAC
CAGGGCATTCTGGCACCATAACAGTGCTGGCCATCGTCCCACGAGATCTGGCATGCCTGAAGACCTACAGCAACACTAGGTTCCTTCCCATGTTGTGCTA
TCCACTCGTCTATTGCAAGTGATTTATCATTTTCGTTTGAATATAGTTTTTTGTTCTTCCCAAATGGATTACTCCCAGGACAGACTATTTCAGCAATTGC
AGCTGGCATATACATCGAGTCACCTACCACTGGTGCACTACATGCAGCTAACTGTGCTCGAATCTGCCAATTATGACCACATATCATCTGAATATCATTG
ATTGTCAAGACATCGATTTTCAAACTGAAATGCCATTTTGAGAAAATCACTGTTTTGGTTCCTTTTCACGTCTTCATTTGTTTTAAGATTGCAAAAACCA
GAGATGAACTTGTAACAAAAGCTACTATTAGTAAAACCAGTTCACGCATGATAAAATAGTTTTAGTCATGTGCGCTCTCTCTCTCTCTTTAAACCTGTAA
ACAGCAACTATGACATACTTTTGCGAACAAGTAACCTGATTCG
>LE_HBa0101D04_SP6_56598 (trimmed for quality and cloning vector)
ATTTTTTTTTTTGGAGACAAGTAACTTTTAGCCTACAGATAATTGTGTTTTATAGTGATTGCTGAATTACAAAGTTCTTACCTTGTGCAGAAGAATTTGT
CAGGCCTGCCACATTATTCTGATGAAGCCAGGCTTAAACATTAGCCACAAGCTTTATCTACCTCCACCAGGGCATTCTGGCACCATAACAGTGCTGGCCA
TCGTCCCACGAGATCTGGCATGCCTGAAGACCTACAGCAACACTAGGTTCCTTCCCATGTTGTGCTATCCACTCGTCTATTGCAAGTGATTTATCATTTT
CGTTTGAATATAGTTTTTTGTTCTTCCCAAATGGATTACTCCCAGGACAGACTATTTCAGCAATTGCAGCTGGCATATACATCGAGTCACCTACCACTGG
TGCACTACATGCAGCTAACTGTGCTCGAATCTGCCAATTATGACCACATATCATCTGAATATCATTGATTGTCAAGACATCGATTTTCAAACTGAAATGC
CATTTTGAGAAAATCACTGTTTTGGTTCCTTTTCACGTCTTCATTTGTTTTAAGATTGCAAAAACCAGAGATGAACTTGTAACAAAAGCTACTATTAGTA
AA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.966612
Expected error %
0.464902
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g21770.1 Score 136 E Value 1e-32 Identity 22.00% Align. Length 299bp (49.67%) Frame 3
68417.m03150 pseudouridine synthase family protein contains Pfam profile PF00849: RNA pseudouridylate synthase
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB81284.1| Score 136 E Value 4e-31 Identity 22.00% Align. Length 299bp (49.67%) Frame 3
hypothetical protein [Arabidopsis thaliana] emb|CAB36821.1| hypothetical protein [Arabidopsis thaliana] gb|AAN13057.1| unknown protein [Arabidopsis thaliana] ref|NP_193908.1| pseudouridine synthase family protein [Arabidopsis thaliana] pir||T05852 hypothetical protein F17L22.230 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_479413.1| Score 112 E Value 9e-24 Identity 18.00% Align. Length 299bp (49.67%) Frame 3
unknown protein [Oryza sativa (japonica cultivar-group)] dbj|BAC83571.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0101D04
Clone
Clone name
hba-101d4
LE_HBa0101D04
P101D04
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found